DRSC/TRiP Functional Genomics Resources

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Protein Alignment ro and exex

DIOPT Version :10

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_648164.1 Gene:exex / 38884 FlyBaseID:FBgn0041156 Length:525 Species:Drosophila melanogaster


Alignment Length:427 Identity:104/427 - (24%)
Similarity:140/427 - (32%) Gaps:179/427 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PDGSPGIKRSDSLDP-----------------IANTTILSVPQRPSSPRQFF--ERLYGHLETRS 56
            |...||:....:..|                 :|.||:|  |...|.|::.|  :.|....:.:|
  Fly   172 PANPPGVPSGAAAPPPVSPQPAANHLSHSGATMATTTLL--PPAQSQPKKSFCIDALLAKSQHQS 234

  Fly    57 SENGEIDVGTH-------------------AHKPPPCDTPYHSDGGSVS---------------- 86
            .|...|.|...                   |...........|..|.:|                
  Fly   235 GEPQPIIVDDRLAALHYARDQAELNHAFVTASNAAAAAQAAASAAGGISEQEALQRIRDSREYDS 299

  Fly    87 -SPD-ISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQL------VHQKLSYV 143
             ||| :|.|:..||          .|....|..|..:.||..|...||..|      .|.:....
  Fly   300 PSPDGMSRSESPTS----------SHRSSPPISPGCEDQQQPHGALHPQHLSMRMSDFHDEFKKP 354

  Fly   144 SPPPA------------------IAAGGAA--NPVLPHAFPAGFPSDPHFSAG---FSAFLAR-- 183
            .||.:                  :|.||:|  .|:.|...|...|...:|...   |. ||||  
  Fly   355 IPPHSPIRPQDFPLYAGGHPYQLLAQGGSAFHRPLDPSGKPIPIPMGHNFMPSQLQFE-FLARAG 418

  Fly   184 ---RRRKE----------GRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQI 235
               .|..|          |:.||.||.|:::|.|.||.:|.:|:|:||.:|||:|..|.|:|||:
  Fly   419 MLHHRIPELAAYPHHAILGKTRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQV 483

  Fly   236 KIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAA 300
            ||||||||.|.||.:|||                                               
  Fly   484 KIWFQNRRMKWKRSKKAQ----------------------------------------------- 501

  Fly   301 ATPAALPKDNTQDANFIDIDDQFQRQQQQKQQQQQQQ 337
                       |:|.        :|.:..:|||||||
  Fly   502 -----------QEAK--------ERAKANQQQQQQQQ 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeodomain 196..248 CDD:459649 29/51 (57%)
exexNP_648164.1 Homeodomain 440..496 CDD:459649 32/55 (58%)

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