Protein Alignment ro and Cdx1

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_001406562.1
• Gene: Cdx1 / 364883
• RGDID: 621233
• Length: 273
• Species: Rattus norvegicus
• Alignment Length: 253
• Identity: 72/253 - (28%)
• Similarity: 92/253 - (36%)
• Gaps: 84/253 - (33%)

  Fly   103 PAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQLVHQKLSYVSPPPA----IAAGGAANPVLPHAF 163
            |.|...|.|...||:|......|......||.      ::.:|.||    .||.....|.:|.|.
  Rat    28 PTYAPPGPAPAPPQYPDFAGYTHVEPAPAPPP------TWAAPFPAPKDDWAAAYGPGPAVPAAS 86

  Fly   164 PA--GFPSDPHFS---------------------AGFSAFLARR------RRK--------EGRQ 191
            ||  .|...|.||                     |..|..:.||      ||.        .|:.
  Rat    87 PAPLAFGPPPDFSPVPAPPGPGPGILAQSLGGPGAPSSPGVQRRTPYEWMRRNVAAAGGGGSGKT 151

  Fly   192 R---RQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQ 253
            |   :.|..::..|.|.||.|||.:.||:..|:.|||..|.|||.|:||||||||||::::.|.:
  Rat   152 RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKK 216

  Fly   254 IDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAAATPAALPKDNT 311
            ..|..:              |....|||                    |...||.|.|
  Rat   217 QQQQQQ--------------QQQQPMPP--------------------TQLPLPLDGT 240

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	28/51 (55%)
Cdx1	NP_001406562.1	Caudal_act	13..140	CDD:461413	30/117 (26%)
		Homeodomain	156..211	CDD:459649	29/54 (54%)