DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ro and HOXA1

DIOPT Version :9

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_005513.2 Gene:HOXA1 / 3198 HGNCID:5099 Length:335 Species:Homo sapiens


Alignment Length:236 Identity:76/236 - (32%)
Similarity:101/236 - (42%) Gaps:51/236 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 IDVGT-----HAHKPPPCDTPYHSDGG-----SVSSPDISISDERTSLAAYPAYDFYGHAK---D 113
            :.:|:     |.|...|....|.:.|.     |.||...|...:..| |.|..|.....|.   .
Human    59 VQIGSPHHHHHHHHRHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFS-APYSPYALNQEADVSGG 122

  Fly   114 YPQ--------HPSQQHQQHHHHHH-------HPPQLVHQKLSYVSPPPAIAAGGAANPVLP-HA 162
            |||        :.|....||||||.       ..||.:|.  ||.....::|.....|.:.| ||
Human   123 YPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHH--SYGQEHQSLALATYNNSLSPLHA 185

  Fly   163 -------FPAGFPSDPHFSAGFSAFLARRRRKE----------GRQRRQRTTFSTEQTLRLEVEF 210
                   .||...|.|  :..|.....:|...:          |:....||.|:|:|...||.||
Human   186 SHQEACRSPASETSSP--AQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKEF 248

  Fly   211 HRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEK 251
            |.|:|::|:||.|:|.:|:|.|||:||||||||.|.|:.||
Human   249 HFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeobox 196..247 CDD:278475 30/50 (60%)
HOXA1NP_005513.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 61..83 5/21 (24%)
Interaction with OGT. /evidence=ECO:0000250|UniProtKB:P09022 75..203 36/132 (27%)
COG5576 176..>286 CDD:227863 42/111 (38%)
Antp-type hexapeptide 204..209 1/4 (25%)
Homeobox 233..286 CDD:365835 31/52 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 281..335 5/9 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45946
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

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