Protein Alignment ro and Vsx1

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Alignment Length: 415
• Identity: 80/415 - (19%)
• Similarity: 114/415 - (27%)
• Gaps: 173/415 - (41%)

  Fly    83 GSVSSP-----DISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHH-----HHHPPQLVH 137
            ||.|||     ..:::..:.:.||..|...:..|.....|....|.|.|.|     |.|.....|
  Fly   280 GSRSSPAGPHHSAALAAHQHAAAAAAAAHHHAAAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAH 344

  Fly   138 QKLSYVSPPPAI--AAGGAANPVLPHAFPAGFPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFST 200
            ...::.....|.  |||||...  |::..|....|.....|.:   ....:|:.::|..||.|::
  Fly   345 AAHAHAHHAEAFLGAAGGAGGN--PNSLLAAHGGDVLVGPGGT---GPGGKKKNKRRHGRTIFTS 404

  Fly   201 EQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKA------------- 252
            .|...||..|....|...|.|..|:....|.|.:|::|:||||||.::.||.
  Fly   405 SQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEKCWGHSTKMAEYGLY 469

  Fly   253 ----------------------------------------------------------------- 252
                                                                             
  Fly   470 GAMVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKSDESDRETPTSDDTNTSYSAGS 534

  Fly   253 ----------------------------------------------------------------- 252
                                                                             
  Fly   535 THNSPISSFSISRLLFDAPPPAAGSAGGKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQ 599

  Fly   253 ---QIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAAATPAALPKDNTQDA 314
               |..||:.:...|...:.  ..|.|.|....|...|...|.|     :...||..|.:..|..
  Fly   600 QQQQQQQHHHHLHAAENSLQ--QQQVAGTGSGSGSGSGSGTGAG-----STGPPAHHPYNQQQHL 657

  Fly   315 NFIDIDDQFQRQQQQKQQQQQQQQR 339
            :.:   .|.|:||||:|||.||||:
  Fly   658 HHL---QQLQQQQQQQQQQAQQQQQ 679

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	20/51 (39%)
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	22/56 (39%)