DRSC/TRiP Functional Genomics Resources

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Protein Alignment ro and hoxc3a

DIOPT Version :10

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_001128157.3 Gene:hoxc3a / 30421 ZFINID:ZDB-GENE-980526-532 Length:263 Species:Danio rerio


Alignment Length:255 Identity:67/255 - (26%)
Similarity:102/255 - (40%) Gaps:49/255 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 TTILSVPQRPSSPRQFFERLYGHLETRSSENGEIDVGTHAHKPPPCDTPY-HSDGGSVSSPDISI 92
            ||:.::..:....|:.......|.|..||||.:.:|....:. .....|| .||.|:.|      
Zfish    39 TTLFTLVGKQLKTRENSSTWKRHAEESSSENDKGNVWNFQNL-SNVQHPYSFSDDGNHS------ 96

  Fly    93 SDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQLVHQKLSYVSPPPAIAAGGAANP 157
            .|...:|....|.:.........::| ...:.|             :|.:.|...|:.:|     
Zfish    97 LDPANALGRKKACELSTSCLSTMKYP-WMRETH-------------ELMHFSSINAMESG----- 142

  Fly   158 VLPHAFPAGFPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRF 222
                        |..:|.|.:..      :....:|.|..|::.|.|.||.|||.:.|:.|:||.
Zfish   143 ------------DSKYSNGEAVV------RNSSSKRARVAFTSSQLLELEKEFHFSAYLCRNRRL 189

  Fly   223 ELAETLRLTETQIKIWFQNRRAKDKR--IEKAQIDQHYRNFVVANGFMSSIMGQAATTMP 280
            |:||.|:||:.||||||||||.|.|:  .||:.....|......|  ...|:.::.|..|
Zfish   190 EMAELLKLTDRQIKIWFQNRRMKYKKDHKEKSTAKSSYTYLGTEN--QPLIISRSTTDSP 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeodomain 196..248 CDD:459649 29/51 (57%)
hoxc3aNP_001128157.3 None

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