Protein Alignment ro and hoxd9a

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_571201.3
• Gene: hoxd9a / 30350
• ZFINID: ZDB-GENE-990415-121
• Length: 262
• Species: Danio rerio
• Alignment Length: 255
• Identity: 69/255 - (27%)
• Similarity: 95/255 - (37%)
• Gaps: 57/255 - (22%)

  Fly    44 FFERLYGHLETRSSENGEIDVGTHAHKPPPCDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFY 108
            :.:.:.|| |...........|:|.....|        .|.|.:.|.|........|.:||....
Zfish    11 YVDTIMGH-EAEDVYGARYIQGSHTAPARP--------SGVVENADFSSCSFAPKSAVFPASWSS 66

  Fly   109 GH-----AKDYPQHPSQQHQQHHHHHHHPPQLVHQKLSYVSPP---PAIAAGGAANPVLP----- 160
            .|     |.....|| ..||.|...:.:....:....:::|..   |.....|.....||
Zfish    67 VHQPSTAAVSGIYHP-YVHQTHLSDNRYVRSWIEPVANHISLTGFHPNSRHSGTKTESLPPKRTE 130

  Fly   161 -HAFPAGFPSDPHFS---AGFSAFLARRRR-----------KEGRQ------------------- 191
             .||....||.|.||   ...||..|...|           |:.:|
Zfish   131 SAAFETETPSVPEFSLNAVSESADKATEERVGSDNSSHGEPKDEKQQQQLDPSNPAANWIHARST 195

  Fly   192 RRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEK 251
            |::|..::..|||.||.||..|.|::|.||:|:|..|.|||.|:||||||||.|.|::.:
Zfish   196 RKKRCPYTKYQTLELEKEFLYNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMNR 255

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	28/51 (55%)
hoxd9a	NP_571201.3	Hox9_act	1..182	CDD:461369	38/180 (21%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	107..187		17/79 (22%)
		Homeodomain	196..252	CDD:459649	30/55 (55%)