DRSC/TRiP Functional Genomics Resources

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Protein Alignment ro and Hoxb1

DIOPT Version :9

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:XP_220896.4 Gene:Hoxb1 / 303491 RGDID:1310298 Length:297 Species:Rattus norvegicus


Alignment Length:217 Identity:63/217 - (29%)
Similarity:87/217 - (40%) Gaps:45/217 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 PCDTPYHSDGGSVSSPDISI-----SDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHP 132
            |......:.|..|..|..|:     |...:..|.......||.::.|....|:....:.|...:.
  Rat    50 PSSALQQNSGYPVQQPPSSLGVSFPSSAPSGYAPAACNPSYGPSQYYSMGQSEGDGGYFHPSSYG 114

  Fly   133 PQLVHQKLSYVSPPPAIAAGG-AANPVLPHAFPAGFPSDPHFSAGF---------------SAFL 181
            .||       ...|.:..||| .:.|..|...|.|.....:|::.:               |:..
  Rat   115 AQL-------GGLPDSYGAGGVGSGPYPPPQPPYGTEQTSNFASAYDLLSEDKESSCSSEPSSLT 172

  Fly   182 AR-------RRRKE----------GRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLR 229
            ||       :|...          |.....||.|:|.|...||.|||.|:|:||:||.|:|.||.
  Rat   173 ARTFDWMKVKRNPPKTAKVSELGLGTPGGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLE 237

  Fly   230 LTETQIKIWFQNRRAKDKRIEK 251
            |.|||:||||||||.|.|:.|:
  Rat   238 LNETQVKIWFQNRRMKQKKRER 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeobox 196..247 CDD:278475 32/50 (64%)
Hoxb1XP_220896.4 Homeobox 203..255 CDD:278475 33/51 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45946
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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