Protein Alignment ro and hoxc4a

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_571197.1
• Gene: hoxc4a / 30345
• ZFINID: ZDB-GENE-990415-112
• Length: 268
• Species: Danio rerio
• Alignment Length: 300
• Identity: 77/300 - (25%)
• Similarity: 102/300 - (34%)
• Gaps: 116/300 - (38%)

  Fly    70 KPPPCD-------TPYHSDGGSVSSPDISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHH 127
            |.|||:       .|.||.                        ::|..|:|       ...||||
Zfish    16 KFPPCEEYSQNSYIPEHSP------------------------EYYSRARD-------SGYQHHH 49

  Fly   128 HHHHPPQLVHQKLSY------------------------------VSPPP-------AIAAGGAA 155
            ...:||:..:|:..|                              ..|||       ..||..|.
Zfish    50 QELYPPRASYQERQYNCASIPEPDTQRGHGLPHAGHLLGKGQSASCEPPPLPLSPATPSAASSAC 114

  Fly   156 NPVLP-HAFPAGFPSDP---------HFSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEF 210
            |...| |...:.....|         |.|...|::      .....:|.||.::.:|.|.||.||
Zfish   115 NQATPEHPNSSASAKQPVVYPWMKKIHVSTVNSSY------NGAEPKRSRTAYTRQQVLELEKEF 173

  Fly   211 HRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQA 275
            |.|.|::|.||.|:|.:|.|:|.||||||||||.|.|:      |....|
Zfish   174 HYNRYLTRRRRIEIAHSLVLSERQIKIWFQNRRMKWKK------DHRLPN--------------- 217

  Fly   276 ATTMPPGGVTGGVAVGVGLNYYAAAATPAALPKDNTQDAN 315
             |.:.....||   :..|.|..:||...||....||..|:
Zfish   218 -TKVRSSSSTG---ISSGSNTSSAAGVVAAASTTNTMSAS 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	29/51 (57%)
hoxc4a	NP_571197.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	70..129		9/58 (16%)
		Antp-type hexapeptide	133..138		0/4 (0%)
		Homeodomain	155..211	CDD:459649	31/55 (56%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	212..268		14/60 (23%)