Protein Alignment ro and Gsx1

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_001178592.1
• Gene: Gsx1 / 288457
• RGDID: 1310020
• Length: 261
• Species: Rattus norvegicus
• Alignment Length: 300
• Identity: 82/300 - (27%)
• Similarity: 113/300 - (37%)
• Gaps: 77/300 - (25%)

  Fly    41 PRQFFERLYGHLETRSSENGEIDVGTHAHKPPPCDTPY-----HSDGGSVSSPDISISDERTSLA 100
            ||.|   |...|..|.:.:.:...|:    |||. .||     |:..|  .||....:.:...|.
  Rat     2 PRSF---LVDSLVLREASDKKAPEGS----PPPL-FPYAVPPPHALHG--LSPGACHARKAGLLC 56

  Fly   101 AYP----AYDFYGH---------AKDYPQHPSQQ-HQQHHHHHHHPPQLVHQKLSYVSPPPAIAA 151
            ..|    |...:|.         ...:|...||. |......|...|.:.|.        ||.||
  Rat    57 VCPLCVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSVSPGVAHS--------PAAAA 113

  Fly   152 GGAANPVLPHAFPAGFPSDPH-FSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEY 215
            ..||  :...::|...|...| .|...|:      .:....:|.||.|::.|.|.||.||..|.|
  Rat   114 AAAA--LYQTSYPLPDPRQFHCISVDSSS------NQLPSSKRMRTAFTSTQLLELEREFASNMY 170

  Fly   216 ISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMP 280
            :||.||.|:|..|.|:|.|:||||||||.|.|:                .|..|:..|.|.
  Rat   171 LSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK----------------EGKGSNHRGGAG---- 215

  Fly   281 PGGVTGGVAVGVGLNYYAAA----------ATPAALPKDN 310
             .|..||...|...:..::|          .:|::..||:
  Rat   216 -AGAGGGAPQGCKCSSLSSAKCSEDDDELPMSPSSSGKDD 254

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	29/51 (57%)
Gsx1	NP_001178592.1	Homeodomain	147..203	CDD:459649	31/55 (56%)