DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ro and Hoxd9

DIOPT Version :9

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_038583.1 Gene:Hoxd9 / 15438 MGIID:96210 Length:339 Species:Mus musculus


Alignment Length:269 Identity:74/269 - (27%)
Similarity:98/269 - (36%) Gaps:88/269 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GSPDGSPGIKRSDSLDPIANTTILSVPQRPSSPRQFFERLYGHLETRSSENGEIDVGTHAHKPPP 73
            |...|.||        |:.:      |..|::.|.     ||    ...|.|.      |..|..
Mouse   126 GGGGGGPG--------PVPS------PGGPANGRH-----YG----IKPETGA------APAPAA 161

  Fly    74 CDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQLVHQ 138
            ..|      .|.||...|.|.:||..:|  |.:..|...  |:.|..                  
Mouse   162 AST------SSSSSTSSSSSSKRTECSA--ARESQGSGG--PEFPCN------------------ 198

  Fly   139 KLSYVSPPPAIAAG---GAANPVLPHAFPAGFPS--DPHFSAGFSAFLARRRRKEGRQ------- 191
              |::....|.|.|   |......|.|..:..||  ..|.|.|.|   .:...|:..|       
Mouse   199 --SFLRDKAAAATGNGPGVGIGTGPGAVGSSEPSACSDHPSPGCS---LKEEEKQPPQPPQQQLD 258

  Fly   192 --------------RRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNR 242
                          |::|..::..|||.||.||..|.|::|.||:|:|..|.|||.|:|||||||
Mouse   259 PNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNR 323

  Fly   243 RAKDKRIEK 251
            |.|.|::.|
Mouse   324 RMKMKKMSK 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeobox 196..247 CDD:278475 28/50 (56%)
Hoxd9NP_038583.1 Hox9_act 1..>153 CDD:282473 10/49 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..198 27/110 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..263 11/54 (20%)
HOX 272..324 CDD:197696 27/51 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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