DRSC/TRiP Functional Genomics Resources

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Protein Alignment ro and Hoxa6

DIOPT Version :9

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_034584.1 Gene:Hoxa6 / 15403 MGIID:96178 Length:232 Species:Mus musculus


Alignment Length:192 Identity:60/192 - (31%)
Similarity:83/192 - (43%) Gaps:31/192 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 PYHSDGGSVSSPDISIS-----DERTSLAA-------YPAYDFYGHAKDYPQHPSQQHQQHHHHH 129
            |:.:..|:.|.||.:.:     .:..|:.|       |.|..||.........||..::|     
Mouse    37 PFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGNNKQ----- 96

  Fly   130 HHPPQLVHQKLSYVSPPPAIAAGGAANPVLPHAFPAGFPSDPHFSAGFSAFLARRRRKEG----- 189
            ..|...:|     .||.......|:......|  ..|  :|..:::....::.|.....|     
Mouse    97 RGPGDYLH-----FSPEQQYKPDGSVQGKALH--EEG--TDRKYTSPVYPWMQRMNSCAGAVYGS 152

  Fly   190 RQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEK 251
            ..||.|.|::..|||.||.|||.|.|::|.||.|:|..|.|||.||||||||||.|.|:..|
Mouse   153 HGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeobox 196..247 CDD:278475 31/50 (62%)
Hoxa6NP_034584.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..126 9/49 (18%)
Antp-type hexapeptide 135..140 0/4 (0%)
Homeobox 158..210 CDD:278475 32/51 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.900

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