Protein Alignment ro and Hoxa4

DIOPT Version :9

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_077326.1
• Gene: Hoxa4 / 100912525
• RGDID: 2814
• Length: 285
• Species: Rattus norvegicus
• Alignment Length: 290
• Identity: 81/290 - (27%)
• Similarity: 110/290 - (37%)
• Gaps: 79/290 - (27%)

  Fly     9 GSPDGSPGIKRSDSLDPIANTTILSVPQRPS--SPRQFFERLYGHLETRSSENGEIDVGTHAHKP 71
            |...|.||..|..|...:......:..|.|:  :||......:|.|                :..
  Rat    34 GGVGGGPGYPRPQSSPHLPAPNPHAARQTPAYYAPRAREPSYHGGL----------------YPA 82

  Fly    72 PPCDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQLV 136
            |....||...|.|.:.|:.|           ||..  .|....||.|:            ||
  Rat    83 PAAACPYACRGASPARPEQS-----------PAPG--AHPSPAPQPPA------------PP--- 119

  Fly   137 HQKLSYVSPPPAIAAGGAANPVLPHAFPAGFPSDP--------------HFSAGFSAFLARRRRK 187
             ::.:.....||:|.||:| |..|.......|:.|              |.||...::      .
  Rat   120 -RRCAPGPTTPAVATGGSA-PACPLLLADQGPAGPKGKEPVVYPWMKKIHVSAVNPSY------N 176

  Fly   188 EGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKA 252
            .|..:|.||.::.:|.|.||.|||.|.|::|.||.|:|.||.|:|.|:||||||||.|.|:..|
  Rat   177 GGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK- 240

  Fly   253 QIDQHYRNFVVANGFMSSIMGQAATTMPPG 282
                      :.|..|.|....:|...|||
  Rat   241 ----------LPNTKMRSSNPASAPAGPPG 260

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeobox	196..247	CDD:278475	29/50 (58%)
Hoxa4	NP_077326.1	Homeobox	183..236	CDD:278475	30/52 (58%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	2.000