Protein Alignment ro and Hoxa4

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_077326.1
• Gene: Hoxa4 / 100912525
• RGDID: 2814
• Length: 285
• Species: Rattus norvegicus
• Alignment Length: 290
• Identity: 81/290 - (27%)
• Similarity: 110/290 - (37%)
• Gaps: 79/290 - (27%)

  Fly     9 GSPDGSPGIKRSDSLDPIANTTILSVPQRPS--SPRQFFERLYGHLETRSSENGEIDVGTHAHKP 71
            |...|.||..|..|...:......:..|.|:  :||......:|.|                :..
  Rat    34 GGVGGGPGYPRPQSSPHLPAPNPHAARQTPAYYAPRAREPSYHGGL----------------YPA 82

  Fly    72 PPCDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQLV 136
            |....||...|.|.:.|:.|           ||..  .|....||.|:            ||
  Rat    83 PAAACPYACRGASPARPEQS-----------PAPG--AHPSPAPQPPA------------PP--- 119

  Fly   137 HQKLSYVSPPPAIAAGGAANPVLPHAFPAGFPSDP--------------HFSAGFSAFLARRRRK 187
             ::.:.....||:|.||:| |..|.......|:.|              |.||...::      .
  Rat   120 -RRCAPGPTTPAVATGGSA-PACPLLLADQGPAGPKGKEPVVYPWMKKIHVSAVNPSY------N 176

  Fly   188 EGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKA 252
            .|..:|.||.::.:|.|.||.|||.|.|::|.||.|:|.||.|:|.|:||||||||.|.|:..|
  Rat   177 GGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK- 240

  Fly   253 QIDQHYRNFVVANGFMSSIMGQAATTMPPG 282
                      :.|..|.|....:|...|||
  Rat   241 ----------LPNTKMRSSNPASAPAGPPG 260

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	29/51 (57%)
Hoxa4	NP_077326.1	Homeodomain	181..237	CDD:459649	31/55 (56%)