Protein Alignment ro and hoxc5

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: XP_002936695.2
• Gene: hoxc5 / 100487879
• XenbaseID: XB-GENE-485672
• Length: 225
• Species: Xenopus tropicalis
• Alignment Length: 249
• Identity: 70/249 - (28%)
• Similarity: 89/249 - (35%)
• Gaps: 88/249 - (35%)

  Fly    14 SPGIKRSDSLDPIANTTILSVPQRPSSPRQFFER-------LYGHLETRSSENGEIDVGTHAHKP 71
            |||...|           ||....||:|....||       ..||...| .|...::.|.:..|.
 Frog    51 SPGSSNS-----------LSALDMPSNPNANSERPSCTVMGSSGHTVGR-GEQSALNSGIYNQKA 103

  Fly    72 PPCDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFYGHAKDYPQ--HPSQQHQQHHHHHHHPPQ 134
            ........|.|         |...:|.           .|:..||  .|.||.||      .|||
 Frog   104 ATTSLEERSKG---------IESIKTE-----------PAQSTPQGGQPQQQQQQ------QPPQ 142

  Fly   135 LVHQKLSYVSPPPAIAAGGAANPVLPHAFPAGFPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFS 199
            :                           :|  :.:..|.|            .|...:|.||:::
 Frog   143 I---------------------------YP--WMTKLHMS------------HETDGKRSRTSYT 166

  Fly   200 TEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQ 253
            ..|||.||.|||.|.|::|.||.|:|..|.|.|.||||||||||.|.|:..|.:
 Frog   167 RYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDTKVK 220

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	30/51 (59%)
hoxc5	XP_002936695.2	Homeodomain	159..215	CDD:459649	32/55 (58%)