Protein Alignment ro and Hoxb2

DIOPT Version :9

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: XP_002727852.1
• Gene: Hoxb2 / 100361765
• RGDID: 2319509
• Length: 355
• Species: Rattus norvegicus
• Alignment Length: 301
• Identity: 75/301 - (24%)
• Similarity: 97/301 - (32%)
• Gaps: 107/301 - (35%)

  Fly    15 PGIKRSDSLDPIANTTILSVPQRPSSPRQFFERLYGHLETRSSENGEIDVGTHAHKPPPCDTPYH 79
            |.:..:.....|..:|:  :|..|....|.|..|.....|......:...|......||...|
  Rat    26 PAVLETFQTSSIKESTL--IPPPPPPLEQTFPSLQLGASTLQRPGSQKPAGDGPALRPPPPLP-- 86

  Fly    80 SDGGSVSSPDISISDERTSLAAYPAYDF-YGHAKDYPQHPSQQHQQHHHHHHHPPQLVHQKLSYV 143
                                .|.||.:| :...|...:.|||                    |..
  Rat    87 --------------------VAPPAPEFPWMKEKKSAKKPSQ--------------------SAA 111

  Fly   144 SPPPA---IAAGGAANPV----LPHAFPAGFPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFSTE 201
            :|.||   :.|.|..:|.    ||.:..:|                        .||.||.::..
  Rat   112 TPSPAASSVRASGVGSPSDGPGLPESGGSG------------------------SRRLRTAYTNT 152

  Fly   202 QTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANG 266
            |.|.||.|||.|:|:.|.||.|:|..|.|||.|:|:||||||.|.||
  Rat   153 QLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR------------------ 199

  Fly   267 FMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAAATPAALP 307
                   |.....||.|..|      ||:....|..||..|
  Rat   200 -------QTQHREPPDGEPG------GLSAQDDAGEPAEEP 227

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeobox	196..247	CDD:278475	28/50 (56%)
Hoxb2	XP_002727852.1	Homeobox	146..198	CDD:278475	29/51 (57%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.900