Protein Alignment ro and hoxd3

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: XP_002935734.1
• Gene: hoxd3 / 100038058
• XenbaseID: XB-GENE-478462
• Length: 415
• Species: Xenopus tropicalis
• Alignment Length: 364
• Identity: 91/364 - (25%)
• Similarity: 133/364 - (36%)
• Gaps: 111/364 - (30%)

  Fly    32 LSVPQRPSSPRQFFER--LYGHLETRSSENGEIDVGTHAHKPPPCDTPYHSDGGSV--------- 85
            ||:.:.......::|.  |:|.......|:.........:.....|:.|.|...|:
 Frog    10 LSIREAKMQKTAYYENSGLFGGYTYAKPESYSYGPSQQQYPQSSLDSDYPSTACSIQPAAIRAPN 74

  Fly    86 -SSPDISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQLVHQKLSYVSPPPAI 149
             .:.|||.|..||:           .:::..|.||..:||     |..|.|         ||.:.
 Frog    75 HKANDISGSCMRTT-----------SSQNSNQAPSISNQQ-----HQAPSL---------PPSSP 114

  Fly   150 AAGGAANPVLPHAFPAGFPSDPHFSAGFS-AFLARR---RRKEGRQ------------------- 191
            :.|.::         |...|....|:|.| |.|:::   ..||.||
 Frog   115 SHGNSS---------AQKKSKSSNSSGSSQATLSKQIFPWMKESRQNAKQKNTSSSSSTPPGENC 170

  Fly   192 ----------RRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKD 246
                      :|.||.:::.|.:.||.|||.|.|:.|.||.|:|..|.|||.||||||||||.|.
 Frog   171 EEKSPTGPSSKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY 235

  Fly   247 KRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAAATPAALPKDNT 311
            |:.:||:            |.|.|..||:....|.  ::|...||    |.:...|..:|..|..
 Frog   236 KKDQKAK------------GIMHSPAGQSPDRSPT--LSGSNHVG----YSSQLPTVNSLSYDAP 282

  Fly   312 QDANFIDIDDQFQRQQQQKQQQQQQQQRRRETTTPINIC 350
            ...:|              .:.||........|.|::.|
 Frog   283 SPTSF--------------AKSQQNMYGLAAYTAPLSSC 307

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	29/51 (57%)
hoxd3	XP_002935734.1	Homeodomain	181..237	CDD:459649	31/55 (56%)
		DUF4074	352..413	CDD:463833