Protein Alignment Rb97D and AT1G20880

DIOPT Version :10

• Sequence 1: NP_524520.1
• Gene: Rb97D / 43231
• FlyBaseID: FBgn0004903
• Length: 471
• Species: Drosophila melanogaster
• Sequence 2: NP_564127.1
• Gene: AT1G20880 / 838681
• AraportID: AT1G20880
• Length: 274
• Species: Arabidopsis thaliana
• Alignment Length: 300
• Identity: 79/300 - (26%)
• Similarity: 116/300 - (38%)
• Gaps: 77/300 - (25%)

  Fly   124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAI 188
            |:|||||......|.||.:|.|:|:::...::|||.||:.:|:.||.|.|.:|..:|.:.....|
plant    25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPII 89

  Fly   189 KYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSLNQQQQQQGGGQQPPN---GNMQAP---SFRPP 247
                 |.:::..||....:.:| .:..|:.|       ...|..:||:   |::|:|   .|
plant    90 -----DGRRANCNLASLGRSRP-PMQYAVIP-------HAPGRVRPPSPYVGSVQSPRGLHF--- 138

  Fly   248 VPPQQAMGPYQQQPPPAPMSAPPPNFNY-------WGPPPPAMPPYYQQPPPQQMNGWGPYPPPQ 305
                 ...||.|          ||.:||       :|..|.. |.|...   |....:|||...|
plant   139 -----GSHPYHQ----------PPTYNYQQGVVYPYGVTPYG-PDYMYS---QSQGFYGPYMGQQ 184

  Fly   306 -------QNGWNAP-------PPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPMGHNGPPPTAP 356
                   ....|:|       ....|||..:.|.| |...|...|..:||..|...
plant   185 YLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQ-GYSHPGSHVLQLGATSPMSA--------- 239

  Fly   357 GNWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGYQQNYG 396
                :..|.|..:.|:||:...|.| ||....:|..|..|
plant   240 ----IQSPYPSPSAPTHQRVIVQTP-PQYIQSSGSDQTTG 274

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rb97D	NP_524520.1	RRM2_hnRNPA_like	124..196	CDD:409766	26/71 (37%)
		RRM_SF	33..110	CDD:473069
AT1G20880	NP_564127.1	RRM_RBM24_RBM38_like	24..99	CDD:409818	27/78 (35%)
		PABP-1234	<37..246	CDD:130689	62/257 (24%)