DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and AT5G53700

DIOPT Version :9

Sequence 1:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_200181.2 Gene:AT5G53700 / 835451 AraportID:AT5G53700 Length:251 Species:Arabidopsis thaliana


Alignment Length:110 Identity:29/110 - (26%)
Similarity:39/110 - (35%) Gaps:29/110 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 SVKLLTDKTTGKRRGFAFVEFDDYDAVD-----KAILKKQHAI--KYVHVDV----KKSIYN--- 201
            :|:.|..|.|..|:.|:.:..:.||...     |..|.|..|.  |.|.:||    ||.|..   
plant     5 AVRGLESKDTNNRKCFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDFKKRILKSPL 69

  Fly   202 ---LDKKEKQQP------------GGLANAIKPSLNQQQQQQGGG 231
               ...||.:.|            ||....:|....||..:..||
plant    70 FIIFHAKEGESPVDKALELSGTDVGGWNVVVKSLPGQQMYRDPGG 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022
RRM2_hnRNPA_like 124..196 CDD:240774 16/55 (29%)
AT5G53700NP_200181.2 RRM_SF 22..100 CDD:302621 18/77 (23%)
RRM_SF 123..200 CDD:302621
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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