DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and PABN1

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001190511.1 Gene:PABN1 / 835186 AraportID:AT5G51120 Length:265 Species:Arabidopsis thaliana


Alignment Length:141 Identity:35/141 - (24%)
Similarity:64/141 - (45%) Gaps:34/141 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 SRETNISVKKLFVGGLKDNHDEEC----LREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYD 175
            :.:..:..:.::||    |.|..|    ::::|...|.|..|.:|||| .|:.:|||:|||.:.:
plant   133 AEKEEVDSRSIYVG----NVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVE 192

  Fly   176 AVDKAILKKQHAI--KYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSLNQQQQQQGGGQ--QPPN 236
            ||..:::..:..:  :.:.|..|::         ..||            .:|.:|.|:  :|..
plant   193 AVQNSLILNESELHGRQIKVSAKRT---------NVPG------------MRQFRGRGRPFRPMR 236

  Fly   237 GNMQAPSFRPP 247
            |.|....|.||
plant   237 GFMPGVPFYPP 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 23/77 (30%)
RRM_SF 33..110 CDD:473069
PABN1NP_001190511.1 SF-CC1 <56..>213 CDD:273721 22/84 (26%)
RRM_II_PABPs 142..213 CDD:409747 22/75 (29%)
Blue background indicates that the domain is not in the aligned region.

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