DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and UBA2A

DIOPT Version :9

Sequence 1:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001190109.1 Gene:UBA2A / 824853 AraportID:AT3G56860 Length:478 Species:Arabidopsis thaliana


Alignment Length:417 Identity:102/417 - (24%)
Similarity:156/417 - (37%) Gaps:106/417 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DEPLSD---------------ESADVIV-LADR-----EEDDICELEHLRKLFIGGLAPYTTEEN 47
            |||:.|               |:|:..| :|:|     :||.:    | ||:|:.||...|..|.
plant    96 DEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPV----H-RKIFVHGLGWDTKTET 155

  Fly    48 LKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPH----------------- 95
            |...:.|:|::.|...:.|..:.:|:|:|||.| ||....|....:|.                 
plant   156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY-KSRSGARNALKQPQKKIGSRMTACQLASKGP 219

  Fly    96 IIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTT 160
            :..|..: |..|:..|.:.|...: :.||::|..:....|.:.|..:|.:||.:....|..||.|
plant   220 VFGGAPI-AAAAVSAPAQHSNSEH-TQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYT 282

  Fly   161 GKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQ-----PGGLANAIKPS 220
            |:.:||....:...::..:| |::.|.....|:...:...:..|..|||     |....|.    
plant   283 GRPKGFCLFVYKSSESAKRA-LEEPHKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNP---- 342

  Fly   221 LNQQQQQQGGGQQPPNGNMQAPSFRPP---VPPQQAMGPYQQQPPPAPMSAPPPN--FNYWGPPP 280
              :.|:....|..||.|:....:..|.   .|..|.:.|...|...|.:::....  ||      
plant   343 --RYQRNDNNGYGPPGGHGHLMAGNPAGMGGPTAQVINPAIGQALTALLASQGAGLAFN------ 399

  Fly   281 PA----------------------MPPYY--QQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQ 321
            ||                      ||..|  |...|..|.|:|. .|..|.|:..|.|...|..:
plant   400 PAIGQALLGSLGTAAGVNPGNGVGMPTGYGTQAMAPGTMPGYGT-QPGLQGGYQTPQPGQGGTSR 463

  Fly   322 WHANQWGCPPPVQQVPPVGAVPPPMGH 348
               .|.|       |.|.|.  |.|||
plant   464 ---GQHG-------VGPYGT--PYMGH 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 24/93 (26%)
RRM2_hnRNPA_like 124..196 CDD:240774 18/71 (25%)
UBA2ANP_001190109.1 PABP-1234 136..>347 CDD:130689 55/225 (24%)
RRM_SF 140..215 CDD:418427 22/75 (29%)
Med15 361..>465 CDD:312941 24/113 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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