DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and RBP47B

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_188544.1 Gene:RBP47B / 821447 AraportID:AT3G19130 Length:435 Species:Arabidopsis thaliana


Alignment Length:431 Identity:88/431 - (20%)
Similarity:137/431 - (31%) Gaps:153/431 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 DDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFI--------- 78
            ||:      :.|::|.|..:..|..|...:...|:|..|.|:|:..|.:|.|:||:         
plant   105 DDV------KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAE 163

  Fly    79 ----TYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECL 139
                .|:.|:|.:..|..|.:.....|.| |||:      ....::||   |||.|..:..:..|
plant   164 EVLQNYSGSVMPNSDQPFRINWASFSTGE-KRAV------ENGPDLSV---FVGDLSPDVTDVLL 218

  Fly   140 REYFL-QFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLD 203
            .|.|. ::.:|.|.|::.|..||:.:|:.||.|.|.:...:|:.:...|  |.            
plant   219 HETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGA--YC------------ 269

  Fly   204 KKEKQQPGGLANAIKPSLNQQQQ---------------QQGGGQQPPNGNMQAPSF----RPPVP 249
             ..:|...|:|...:...||||.               ..|.|.|....:..|..|    .|.|.
plant   270 -SNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVI 333

  Fly   250 PQQAMGPYQQQPPPAPMSAPPP---NFNYWGPPPPAMPPYYQQPPPQQMNG-----------WGP 300
            .:....|:.|......:..|..   .|..:.....|      :...:.:||           ||.
plant   334 DEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSA------EDAIESLNGTVIGKNTVRLSWGR 392

  Fly   301 YPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPMGHNGPPPTAPGNWNMPPPV 365
            .|..|..|        ...|||                          ||               
plant   393 SPNKQWRG--------DSGQQW--------------------------NG--------------- 408

  Fly   366 PGAAPPSHQQQSSQQPTPQPNFGTGYQQNYGGGPSKHNNMN 406
                                .:..|:..|.|||.:.|::.|
plant   409 --------------------GYSRGHGYNNGGGYANHHDSN 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 21/72 (29%)
RRM_SF 33..110 CDD:473069 25/89 (28%)
RBP47BNP_188544.1 RRM1_SECp43_like 109..189 CDD:409780 20/79 (25%)
RRM2_SECp43_like 201..280 CDD:409781 25/96 (26%)
RRM_SF 320..391 CDD:473069 11/76 (14%)

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