DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and Hnrnpa0

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_084148.1 Gene:Hnrnpa0 / 77134 MGIID:1924384 Length:305 Species:Mus musculus


Alignment Length:211 Identity:87/211 - (41%)
Similarity:119/211 - (56%) Gaps:9/211 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLM 85
            |...:|      |||||||...|:|..|:..:..:|.:.|.||:.:..|||||.|||:||:....
Mouse     2 ENSQLC------KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60

  Fly    86 VDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150
            .|.|....||.:||.|||.|||:.|.:......:..||||||||||.:..|..|.|:|.|||.|.
Mouse    61 ADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVE 125

  Fly   151 SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLAN 215
            ..:::.||.:||:|||.||.|..:||.|||.:.|.|.|:...|:|||::   .|::....||.|.
Mouse   126 KAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAV---PKEDIHAGGGGAR 187

  Fly   216 AIKPSLNQQQQQQGGG 231
            |.:......:.:.|||
Mouse   188 AARGGRGGGRGRGGGG 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 35/71 (49%)
RRM_SF 33..110 CDD:473069 36/76 (47%)
Hnrnpa0NP_084148.1 RRM1_hnRNPA0 5..83 CDD:409764 36/83 (43%)
RRM_SF 99..178 CDD:473069 39/81 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..211 7/26 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 265..305
Blue background indicates that the domain is not in the aligned region.

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