DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and Msi2

DIOPT Version :9

Sequence 1:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:XP_006534494.1 Gene:Msi2 / 76626 MGIID:1923876 Length:378 Species:Mus musculus


Alignment Length:409 Identity:116/409 - (28%)
Similarity:164/409 - (40%) Gaps:97/409 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHII 97
            |:|||||:..|:.::|:.::.::|::.:.:||||..|||||||||:|:.....||:......|.:
Mouse    22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL 86

  Fly    98 DGKTVEAKRALP-RPERESRETNIS---------------------VKKLFVGGLKDNHDEECLR 140
            |.||::.|.|.| |.:.:|:|...|                     .||:|||||..|...|.::
Mouse    87 DSKTIDPKVAFPRRAQPKSQEQGGSWKRTWTTVQARAASGDQMVTRTKKIFVGGLSANTVVEDVK 151

  Fly   141 EYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKK 205
            :||.|||.|....|:.||||.:.|||.||.|::.|.|:|......|.|....|:.||:    ..|
Mouse   152 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA----QPK 212

  Fly   206 EKQQPGGLANAIKPSLNQQQQQQGGGQQPP---------NGNMQAPSFRPPVPPQQAMGPYQQQP 261
            |...|.|              .:|..:..|         .|.:..|:|         :..|.:  
Mouse   213 EVMFPPG--------------TRGRARGLPYTMDAFMLGMGMLGYPNF---------VATYGR-- 252

  Fly   262 PPAPMSAPPPNFNYWGPPPPAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQ 326
             ..|..||...:.:     ||:.||.....|....|                  |..|....|.:
Mouse   253 -GYPGFAPSYGYQF-----PALLPYLNASFPAAAYG------------------PVAAAAVAAAR 293

  Fly   327 WGCPPPVQQVPPVGAVPPPMGHNGPPPTAPGNW---NMPPPVPGAAPPSHQQQ------SSQQPT 382
            ..........|..||...|.|.|   |..||.:   |.|.||.....|:.|..      |:..|.
Mouse   294 GSVLNSYSAQPNFGAPASPAGSN---PARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQ 355

  Fly   383 PQPNFGTGYQQNYGGGPSK 401
            |...||.|. .:..|.|.|
Mouse   356 PGSGFGHGI-ASIPGCPGK 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 32/77 (42%)
RRM2_hnRNPA_like 124..196 CDD:240774 31/71 (44%)
Msi2XP_006534494.1 RRM1_MSI 23..97 CDD:241020 29/73 (40%)
PABP-1234 <35..363 CDD:130689 105/383 (27%)
RRM2_MSI 135..208 CDD:240769 31/72 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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