DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and Msi2

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:XP_006534494.1 Gene:Msi2 / 76626 MGIID:1923876 Length:378 Species:Mus musculus


Alignment Length:409 Identity:116/409 - (28%)
Similarity:164/409 - (40%) Gaps:97/409 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHII 97
            |:|||||:..|:.::|:.::.::|::.:.:||||..|||||||||:|:.....||:......|.:
Mouse    22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL 86

  Fly    98 DGKTVEAKRALP-RPERESRETNIS---------------------VKKLFVGGLKDNHDEECLR 140
            |.||::.|.|.| |.:.:|:|...|                     .||:|||||..|...|.::
Mouse    87 DSKTIDPKVAFPRRAQPKSQEQGGSWKRTWTTVQARAASGDQMVTRTKKIFVGGLSANTVVEDVK 151

  Fly   141 EYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKK 205
            :||.|||.|....|:.||||.:.|||.||.|::.|.|:|......|.|....|:.||:    ..|
Mouse   152 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA----QPK 212

  Fly   206 EKQQPGGLANAIKPSLNQQQQQQGGGQQPP---------NGNMQAPSFRPPVPPQQAMGPYQQQP 261
            |...|.|              .:|..:..|         .|.:..|:|         :..|.:  
Mouse   213 EVMFPPG--------------TRGRARGLPYTMDAFMLGMGMLGYPNF---------VATYGR-- 252

  Fly   262 PPAPMSAPPPNFNYWGPPPPAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQ 326
             ..|..||...:.:     ||:.||.....|....|                  |..|....|.:
Mouse   253 -GYPGFAPSYGYQF-----PALLPYLNASFPAAAYG------------------PVAAAAVAAAR 293

  Fly   327 WGCPPPVQQVPPVGAVPPPMGHNGPPPTAPGNW---NMPPPVPGAAPPSHQQQ------SSQQPT 382
            ..........|..||...|.|.|   |..||.:   |.|.||.....|:.|..      |:..|.
Mouse   294 GSVLNSYSAQPNFGAPASPAGSN---PARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQ 355

  Fly   383 PQPNFGTGYQQNYGGGPSK 401
            |...||.|. .:..|.|.|
Mouse   356 PGSGFGHGI-ASIPGCPGK 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 31/71 (44%)
RRM_SF 33..110 CDD:473069 32/77 (42%)
Msi2XP_006534494.1 RRM_SF 17..104 CDD:473069 33/81 (41%)
PABP-1234 <35..363 CDD:130689 105/383 (27%)
RRM2_MSI 135..208 CDD:240769 31/72 (43%)

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