DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and hnrnpa3

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001315077.1 Gene:hnrnpa3 / 751729 ZFINID:ZDB-GENE-060224-1 Length:340 Species:Danio rerio


Alignment Length:435 Identity:135/435 - (31%)
Similarity:181/435 - (41%) Gaps:129/435 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLM 85
            |..|..|.|.|||||||||:..|||::|:..:.||||:.|.|||||.|.||||||||:||:....
Zfish     2 ESRDSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSE 66

  Fly    86 VDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150
            ||.|...|||.:||:.||.|||:.|.:......:::|||:||||:|::.:|..:||||..:|.:.
Zfish    67 VDAAMTARPHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIE 131

  Fly   151 SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLAN 215
            ::.::.:::|||:|||.||.|||:|.|||.:.:|.|.|...:.:|:|:   |.|:|.|.      
Zfish   132 TIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKA---LPKQEMQS------ 187

  Fly   216 AIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYWGPPP 280
                |.||:.:..|||.....|.                                 ||...|   
Zfish   188 ----SSNQRYRGGGGGNFTGRGG---------------------------------NFGRGG--- 212

  Fly   281 PAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPP 345
                           .|.|.......||:.......||........:|           |.  |.
Zfish   213 ---------------YGGGRGGGDGYNGFGGNYGGGPGGYGGGRGGYG-----------GG--PG 249

  Fly   346 MGHNGPPPTAPG--NWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTG-----------YQQ--NY 395
            .|:.|......|  |:|......|                  |||.|           |..  ||
Zfish   250 YGNQGGGGGFGGFDNYNDRGNFGG------------------NFGGGGGSSGGGGGGNYNDFGNY 296

  Fly   396 GG-----GPSKHNNMNANRMNPYSAGPPNSYHTPQPPAYTGYNAG 435
            ||     ||.|.||.......||..|              ||.:|
Zfish   297 GGQQSNFGPMKGNNFGGRNSGPYGGG--------------GYGSG 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 30/71 (42%)
RRM_SF 33..110 CDD:473069 45/76 (59%)
hnrnpa3NP_001315077.1 RRM1_hnRNPA_like 14..91 CDD:409992 45/76 (59%)
RRM2_hnRNPA3 104..183 CDD:409996 34/81 (42%)
HnRNPA1 292..>315 CDD:463312 9/22 (41%)

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