DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and dazl

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_571599.1 Gene:dazl / 58039 ZFINID:ZDB-GENE-000405-6 Length:229 Species:Danio rerio


Alignment Length:192 Identity:58/192 - (30%)
Similarity:79/192 - (41%) Gaps:44/192 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 ETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF-DDYD---AV 177
            |..::...|||||:....||..:||:|.::|:|..||::|.: .|..:|:.||.| :|.|   .|
Zfish    41 EGKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYR-GGICKGYGFVYFSEDVDIQTIV 104

  Fly   178 DKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAIKPS--LNQQQQQQGGGQQPPNGNMQ 240
            |:.|..|...:|     :..:|    .||:......:..|.||  :|            |...|.
Zfish   105 DQPISFKGKKLK-----LGPAI----MKERSSRSVSSPMIGPSQWVN------------PTPYMY 148

  Fly   241 A----PSFRPPVP----PQQAMGPYQQQPPPAPMSAPPPNFNYWGPPPPAMPPY-YQQPPPQ 293
            .    |...||.|    ..|.|.||....||..| .|....||      |...| ||.|.||
Zfish   149 CSCCPPGLAPPSPVFSGGNQYMQPYSYSSPPGIM-VPQVPMNY------AQTTYAYQYPLPQ 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 27/75 (36%)
RRM_SF 33..110 CDD:473069
dazlNP_571599.1 RRM_DAZL 42..123 CDD:410073 28/90 (31%)
PABP-1234 <47..203 CDD:130689 55/184 (30%)
Blue background indicates that the domain is not in the aligned region.

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