DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rb97D and DAZ4

DIOPT Version :9

Sequence 1:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001375413.1 Gene:DAZ4 / 57135 HGNCID:15966 Length:723 Species:Homo sapiens


Alignment Length:566 Identity:124/566 - (21%)
Similarity:181/566 - (31%) Gaps:220/566 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIID 98
            :|:||:.....|..:...:|::|.|.:|.::.: .|..|:|:||:::...:.|.:...::.| ..
Human    42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITN-RTGVSKGYGFVSFVNDVDVQKIVGSQIH-FH 104

  Fly    99 GKTVE-----------AKRALPRP----------------------------------------- 111
            ||.::           |:...|||                                         
Human   105 GKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAA 169

  Fly   112 ---------ERESR---------------ETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSV 152
                     .||:.               |..|....:||||:....||..:...|.::|:|..|
Human   170 NPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEV 234

  Fly   153 KLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKK----SIYNLDKKEKQQPGGL 213
            |::|:: ||..:|:.||.|.:                  .|||:|    .|:...||.|      
Human   235 KIITNR-TGVSKGYGFVSFVN------------------DVDVQKIVGSQIHFHGKKLK------ 274

  Fly   214 ANAIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNF-NYWG 277
               :.|::.:|:             :.|...:|        .|....||      |||.| |.|.
Human   275 ---LGPAIRKQK-------------LCARHVQP--------RPLVVNPP------PPPQFQNVWR 309

  Fly   278 PP------PPAMPPYYQQPPPQQMNGWGPYP-PPQQ---------NGWNAPPPPPPGAQQWHANQ 326
            .|      .|.:.|   .|..|.:..:..|| .|.|         ..:...|..|..|.|...  
Human   310 NPNTETYLQPQITP---NPVTQHVQAYSAYPHSPGQVITGCQLLVYNYQEYPTYPDSAFQVTT-- 369

  Fly   327 WGCPPPVQQVPPVGAVPP-------------------PMGHNGPPPTAPGNWNMP----PPVPGA 368
             |...||....|..|.|.                   |...|.|...|.| :..|    .|.| |
Human   370 -GYQLPVYNYQPFPAYPRSPFQVTAGYQLPVYNYQAFPAYPNSPFQVATG-YQFPVYNYQPFP-A 431

  Fly   369 APPSHQQQSSQQPTPQPNF-------------GTGYQ---QNYGGGPSKHNN---MNANRMNP-- 412
            .|.|..|.::....|..|:             .||||   .||...|:..|:   :......|  
Human   432 YPSSPFQVTAGYQLPVYNYQAFPAYPNSPFQVATGYQFPVYNYQAFPAYPNSPVQVTTGYQLPVY 496

  Fly   413 -YSAGP--PNS-------YHTPQPPAYTGYNAGPLPPNGSVPPPTG 448
             |.|.|  |||       |   |.|.| .|.|.|..||..|...||
Human   497 NYQAFPAYPNSPFQVATGY---QFPVY-NYQAFPAYPNSPVQVTTG 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 18/86 (21%)
RRM2_hnRNPA_like 124..196 CDD:240774 20/71 (28%)
DAZ4NP_001375413.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27
RRM_DAZL 35..116 CDD:410073 17/75 (23%)
PABP-1234 42..412 CDD:130689 85/432 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..192 2/28 (7%)
RRM_DAZL 200..281 CDD:410073 28/108 (26%)
Daz 407..427 CDD:408642 5/20 (25%)
Daz 431..451 CDD:408642 6/19 (32%)
Daz 455..475 CDD:408642 5/19 (26%)
Daz 479..499 CDD:408642 2/19 (11%)
Daz 503..523 CDD:408642 7/23 (30%)
Daz 527..547 CDD:408642 5/12 (42%)
Daz 551..571 CDD:408642
Daz 575..595 CDD:408642
Daz 599..619 CDD:408642
Daz 623..643 CDD:408642
Daz 647..667 CDD:408642
Daz 671..691 CDD:408642
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.