DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and hnrnpa2b1

DIOPT Version :9

Sequence 1:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001192271.1 Gene:hnrnpa2b1 / 549680 XenbaseID:XB-GENE-490993 Length:350 Species:Xenopus tropicalis


Alignment Length:452 Identity:148/452 - (32%)
Similarity:201/452 - (44%) Gaps:120/452 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
            |.|..||||||||:..|||::|:.:|.||||:.|.|||||.|:||||||||:|::....||.:..
 Frog     4 EKEQFRKLFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMA 68

  Fly    92 NRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLT 156
            .|||.|||:.||.|||:.|.|......:::||||||||:|::.:|..|||||.::|.:.|::::|
 Frog    69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESIEIIT 133

  Fly   157 DKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSL 221
            ||.:||:|||.||.|||:|.|||.:|:|.|.|...:.:|:|:   |.|:|.|.       ::.:.
 Frog   134 DKQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA---LSKQEMQD-------VQNTR 188

  Fly   222 NQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNF-----NYWGPPPP 281
            |.:....|.|.....||..                          |.|..||     .|.|.   
 Frog   189 NSRGGNFGFGDSRGGGNFG--------------------------SGPGGNFRGSSDGYGGG--- 224

  Fly   282 AMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPM 346
                          .|:|       :|:|.          :...|.|        ...|..|...
 Frog   225 --------------RGYG-------DGYNG----------YGGGQSG--------GSFGGGPGYG 250

  Fly   347 GHNGPPPTAPGNWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGYQQ----NYGGGPSKHNNMNA 407
            |..|....:||..|......|.                 .:|.||..    |||||.|.::..|.
 Frog   251 GGRGGYGGSPGYGNQGGGGGGG-----------------GYGGGYDNYGGGNYGGGGSYNDFGNY 298

  Fly   408 NRMNPYSAGPPNSYHTPQPPAYTGYNAGPLPPNGSVPPPTGAKAVGVSNGSVATGGSANSKY 469
            |:.:. |.||..|          |.|.|   .|.|:..|.|....|..:||  .|||....|
 Frog   299 NQQSS-SYGPMKS----------GGNFG---GNRSMGGPYGGGNYGPGSGS--GGGSGGGGY 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 45/76 (59%)
RRM2_hnRNPA_like 124..196 CDD:240774 36/71 (51%)
hnrnpa2b1NP_001192271.1 RRM1_hnRNPA2B1 7..87 CDD:241206 46/79 (58%)
RRM2_hnRNPA2B1 100..179 CDD:241025 40/81 (49%)
HnRNPA1 294..319 CDD:288479 10/38 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 87 1.000 Domainoid score I7857
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 1 1.000 - - FOG0000779
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X431
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.010

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