DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and Hnrnpa1l2-ps2

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001159443.1 Gene:Hnrnpa1l2-ps2 / 545091 MGIID:3645633 Length:320 Species:Mus musculus


Alignment Length:205 Identity:91/205 - (44%)
Similarity:136/205 - (66%) Gaps:13/205 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
            |.|.|||||||||:..||:::|:..:.|||.:.|.|||||..|||||||||:||.....||.|..
Mouse     9 EPEQLRKLFIGGLSFQTTDKSLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

  Fly    92 NRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLT 156
            .|||.:|||.||.|||:.|.:.:....::.|||:||||:|::.:|..||:||.|:|.:..::::|
Mouse    74 ARPHKVDGKVVEPKRAISRQDSQRPGAHLIVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT 138

  Fly   157 DKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSL 221
            |:.:||:|.||||.|||:|:||..:::|.|.:...:.:|:|:   |.|:|      :|:|    .
Mouse   139 DRGSGKKRDFAFVTFDDHDSVDTIVIQKYHNVNGHNCEVRKA---LSKQE------MASA----S 190

  Fly   222 NQQQQQQGGG 231
            :.|:.:.|.|
Mouse   191 SSQRGRSGSG 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 30/71 (42%)
RRM_SF 33..110 CDD:473069 44/76 (58%)
Hnrnpa1l2-ps2NP_001159443.1 RRM1_hnRNPA1 12..92 CDD:410154 46/79 (58%)
RRM_SF 105..184 CDD:473069 34/81 (42%)
HnRNPA1 255..>281 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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