DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and rbm38

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001006916.1 Gene:rbm38 / 448763 XenbaseID:XB-GENE-489545 Length:219 Species:Xenopus tropicalis


Alignment Length:216 Identity:61/216 - (28%)
Similarity:86/216 - (39%) Gaps:58/216 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAI 188
            |:|||||..:..:..||:||..||::....::||:.|||.||:.||...|..|.::| .|..:.|
 Frog    12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERA-CKDPNPI 75

  Fly   189 KYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSLNQQQQQQGGGQQP---------PNGNMQAPSF 244
                :|.:|:..|| .....:|..|.:|.  ::..||......|:|         |...:| ||.
 Frog    76 ----IDGRKANVNL-AYLGAKPRNLQSAF--TIGVQQLHPAFIQRPFGLTPQYIYPPAIVQ-PSV 132

  Fly   245 RPPVPPQQAMGP------------------YQQQP---PPA--------------PMSAPPPNFN 274
            ..|.|......|                  |:|.|   .||              |:||......
 Frog   133 VIPTPIPSLQSPYIDYNAATQAFTHYTTAAYEQYPYAASPATGYMGYGYTSAVQQPLSATTTTAT 197

  Fly   275 YWGPPPPAMPPYYQQPPPQQM 295
             .|.||.|    |.|..|||:
 Frog   198 -TGAPPTA----YIQYQPQQL 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 27/71 (38%)
RRM_SF 33..110 CDD:473069
rbm38NP_001006916.1 RRM_RBM24_RBM38_like 11..86 CDD:409818 30/79 (38%)
PABP-1234 <23..187 CDD:130689 43/172 (25%)
Blue background indicates that the domain is not in the aligned region.

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