Protein Alignment Rb97D and msi

DIOPT Version :9

• Sequence 1: NP_001014671.1
• Gene: Rb97D / 43231
• FlyBaseID: FBgn0004903
• Length: 471
• Species: Drosophila melanogaster
• Sequence 2: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Alignment Length: 467
• Identity: 124/467 - (26%)
• Similarity: 179/467 - (38%)
• Gaps: 111/467 - (23%)

  Fly    33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHII 97
            |||:|||:..|:.:.||.::..:|.|.||::|:|..|:|||||||||:.:...|::..:...|.:
  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268

  Fly    98 DGKTVEAKRALP--RPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTT 160
            |||.::.|.|.|  || |::.:|    ||:||||:..:...|.::.||.|||.|....:|.|:.|
  Fly   269 DGKKIDPKHATPKNRP-RQANKT----KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQT 328

  Fly   161 GKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQP-----------GGLA 214
            .:.|||.||.|::.|.||:......|.||...|:.||:    ..||...|           |.|.
  Fly   329 KRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA----QPKEAVTPAAQLLQKRIMLGTLG 389

  Fly   215 NAIKPSLNQQQQQQGGG---------QQPPNGNMQAPSFRPPVPPQQA----MGPYQQQPPPAPM 266
            ..:..:..|....:|.|         .|.|...:|:|:  .....|||    ..|:|.|...|..
  Fly   390 VQLPTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPA--AAAAAQQAALISQNPFQVQNAAAAA 452

  Fly   267 S-APPPNFNYWGPPPPAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCP 330
            | |....|.       .:...|.|.....:. :.||..|..       .....|....|:|
  Fly   453 SIANQAGFG-------KLLTTYPQTALHSVR-YAPYSIPAS-------AATANAALMQAHQ---- 498

  Fly   331 PPVQQVPPVGAVPPPMGHNGPPPTAPGNWNMPPPVPGAAPPSHQQQSS-----QQPTPQPNFGTG 390
              .|.|                              .||...||||..     ||.|...:....
  Fly   499 --AQSV------------------------------AAAAHHHQQQQQQQHHHQQQTHNAHVAAA 531

  Fly   391 YQQNYGGGPSKHNNMNANRMNPYSAGPPNSYHTPQPPAYTGYNAGPLPPNGSVPPPTGAKAVGVS 455
            .||.     ..|:|..:|        |.:..|:....|....||.    ||:......:.|....
  Fly   532 QQQQ-----QSHHNAVSN--------PASQAHSAAAAAALAANAA----NGAGAAGAHSLAAAAQ 579

  Fly   456 NGSVATGGSANS 467
            ...:..|...|:
  Fly   580 QAGLMAGNPLNA 591

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rb97D	NP_001014671.1	RRM1_hnRNPA_like	33..110	CDD:241022	33/78 (42%)
		RRM2_hnRNPA_like	124..196	CDD:240774	28/71 (39%)
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	29/70 (41%)
		RRM2_MSI	292..365	CDD:240769	28/72 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463953
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840