Protein Alignment Rb97D and pabpn1

DIOPT Version :10

• Sequence 1: NP_524520.1
• Gene: Rb97D / 43231
• FlyBaseID: FBgn0004903
• Length: 471
• Species: Drosophila melanogaster
• Sequence 2: NP_001001230.1
• Gene: pabpn1 / 407911
• XenbaseID: XB-GENE-1007049
• Length: 296
• Species: Xenopus tropicalis
• Alignment Length: 196
• Identity: 44/196 - (22%)
• Similarity: 72/196 - (36%)
• Gaps: 62/196 - (31%)

  Fly    65 RDAATKRS-----RGFGFITYTKSLMVDRAQENRP------HIIDGKTVEAKRALPRPERE---- 114
            |.|..:||     .|.|.....:.|..:..:|..|      ..|:...:||.:|..|...|
 Frog    62 RTAPGRRSGGRGGSGGGGAGGLEELEDEELEEEEPGELTGDQTIEDPELEAIKARVREMEEEAEK 126

  Fly   115 --------SRETNIS--------------------VKKLFVGGLKDNHDEECLREYFLQFGNVVS 151
                    .::.|:|                    .:.::||.:......|.|..:|...|:|..
 Frog   127 LKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNR 191

  Fly   152 VKLLTDKTTGKRRGFAFVEFDDYD------AVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQP 210
            |.:|.||.||..:|||::||.|.:      |:|:::.:.:. ||.|            .|...:|
 Frog   192 VTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ-IKVV------------PKRTNRP 243

  Fly   211 G 211
            |
 Frog   244 G 244

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rb97D	NP_524520.1	RRM2_hnRNPA_like	124..196	CDD:409766	24/77 (31%)
		RRM_SF	33..110	CDD:473069	13/55 (24%)
pabpn1	NP_001001230.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..102		9/39 (23%)
		Necessary for homooligomerization. /evidence=ECO:0000250|UniProtKB:Q86U42	146..296		27/112 (24%)
		RRM_II_PABPN1	164..239	CDD:409966	24/87 (28%)