DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and hnrnpa0

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_988923.1 Gene:hnrnpa0 / 394519 XenbaseID:XB-GENE-1000573 Length:309 Species:Xenopus tropicalis


Alignment Length:396 Identity:114/396 - (28%)
Similarity:162/396 - (40%) Gaps:123/396 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 DREEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKS 83
            |.:...:|      |||||||...||||.|:..:..:|::.|.||:.:..|||||.|||:||:.:
 Frog     5 DMDTTQLC------KLFIGGLNVQTTEEGLRQHFETYGQLTDCVVVINPQTKRSRCFGFVTYSSA 63

  Fly    84 LMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGN 148
            ...|.|.|..||::||..||.|||:.|.:......:..||||||||||::..|..|.|:|.|||.
 Frog    64 AEADAAVEASPHVVDGNNVELKRAVSREDSAKPGAHAKVKKLFVGGLKEDVGESDLLEHFAQFGA 128

  Fly   149 VVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGL 213
            |..|:::.||.:||:|||.||.|.::|:.|||.:.|.|:|....|:|||::   .|:|..|  |.
 Frog   129 VEKVEIIADKVSGKKRGFGFVYFTNHDSADKAAVVKFHSINGHRVEVKKAV---PKEELSQ--GS 188

  Fly   214 ANAIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYWGP 278
            ..:.:.....:.:..||..:..||                          .|.|.....|.    
 Frog   189 NRSFRGGRGGRGRGGGGAPRDYNG--------------------------IPGSGGKAAFG---- 223

  Fly   279 PPPAMPPYYQQPPPQQMNGWGPYPPPQQ----------------NGWNAPPPPPPGAQQWHANQW 327
                             .|:|.|....|                ||:|:     .|:...|.:.:
 Frog   224 -----------------GGYGGYGGGNQGYGSYGGGYGEQSDYGNGYNS-----FGSYSQHQSSY 266

  Fly   328 GCPPPVQQVPPVGAVPPPMGHNGPPPTAPGNWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGYQ 392
            |        |..||             ..|:||                       :||....|:
 Frog   267 G--------PMKGA-------------GSGSWN-----------------------RPNTSGPYR 287

  Fly   393 QNYGGG 398
            ..|.||
 Frog   288 GGYSGG 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 35/71 (49%)
RRM_SF 33..110 CDD:473069 38/76 (50%)
hnrnpa0NP_988923.1 RRM_SF 10..88 CDD:473069 38/83 (46%)
RRM2_hnRNPA0 104..183 CDD:409993 39/81 (48%)
HnRNPA1 249..>278 CDD:463312 10/54 (19%)

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