DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and Pabpn1l

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001007463.1 Gene:Pabpn1l / 382035 MGIID:2685954 Length:273 Species:Mus musculus


Alignment Length:174 Identity:43/174 - (24%)
Similarity:72/174 - (41%) Gaps:23/174 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 PHIIDGKTVEAKRA----LPRPE-------RESRETNISV--KKLFVGGLKDNHDEECLREYFLQ 145
            |..:..|..|.:||    |..||       |.|:| |:..  :.:|||.:........|..||..
Mouse   102 PPCVQRKATEEERAEVRQLLSPETVDCFFSRTSKE-NVEADHRSVFVGNVDYGGSAAELEAYFSP 165

  Fly   146 FGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQP 210
            .|.:..|.:|.||.:|..:|:|::||..:.:|..|:...:...:...:.|.....|.........
Mouse   166 CGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGISSTDR 230

  Fly   211 GGL-------ANAIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPP 247
            |||       |..:..||:::.:.:..|:...:|.  ||.:..|
Mouse   231 GGLRTHSGNRAAFLHGSLHRKARLRAHGRSRGHGG--APQWFSP 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 18/71 (25%)
RRM_SF 33..110 CDD:473069 6/19 (32%)
Pabpn1lNP_001007463.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..57
RRM_SF 144..220 CDD:473069 19/75 (25%)
Blue background indicates that the domain is not in the aligned region.

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