Protein Alignment Rb97D and Msi2

DIOPT Version :9

• Sequence 1: NP_001014671.1
• Gene: Rb97D / 43231
• FlyBaseID: FBgn0004903
• Length: 471
• Species: Drosophila melanogaster
• Sequence 2: XP_038943587.1
• Gene: Msi2 / 360596
• RGDID: 1560397
• Length: 354
• Species: Rattus norvegicus
• Alignment Length: 414
• Identity: 117/414 - (28%)
• Similarity: 162/414 - (39%)
• Gaps: 105/414 - (25%)

  Fly    33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHII 97
            |:|||||:..|:.::|:.::.::|::.:.:||||..|||||||||:|:.....||:......|.:
  Rat    22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL 86

  Fly    98 DGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGK 162
            |.||::.|.|.||..:....|.  .||:|||||..|...|.:::||.|||.|....|:.||||.:
  Rat    87 DSKTIDPKVAFPRRAQPKMVTR--TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149

  Fly   163 RRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSLNQQQQQ 227
            .|||.||.|::.|.|:|......|.|....|:.||:    ..||...|.|              .
  Rat   150 HRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA----QPKEVMFPPG--------------T 196

  Fly   228 QGGGQQPP---------NGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYWGPPPPAM 283
            :|..:..|         .|.:..|:|         :..|.:   ..|..||...:.:     ||:
  Rat   197 RGRARGLPYTMDAFMLGMGMLGYPNF---------VATYGR---GYPGFAPSYGYQF-----PAL 244

  Fly   284 PPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPMGH 348
            .||.....|....|                  |..|....|.:..........|..||...|.|.
  Rat   245 LPYLNASFPAAAYG------------------PVAAAAVAAARGSVLNSYSAQPNFGAPTSPAGS 291

  Fly   349 NGPPPTAPGNW---NMPPPVPGAAPPSHQQQ------SSQQPTPQPNFGTGYQQNYGGGPSKHNN 404
            |   |..||.:   |.|.||.....|:.|..      |:..|.|...||.|.
  Rat   292 N---PARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGI------------- 340

  Fly   405 MNANRMNPYSAGP------PNSYH 422
                      |||      .|.||
  Rat   341 ----------AGPLIATAFTNGYH 354

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rb97D	NP_001014671.1	RRM1_hnRNPA_like	33..110	CDD:241022	31/76 (41%)
		RRM2_hnRNPA_like	124..196	CDD:240774	31/71 (44%)
Msi2	XP_038943587.1	RRM1_MSI2	17..109	CDD:410153	34/88 (39%)
		PABP-1234	<35..351	CDD:130689	107/396 (27%)
		RRM2_MSI	111..184	CDD:240769	31/72 (43%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910