DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and Hrb27C

DIOPT Version :9

Sequence 1:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001162897.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster


Alignment Length:469 Identity:130/469 - (27%)
Similarity:191/469 - (40%) Gaps:112/469 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLM 85
            |||:      ..|||:|||:..||:|||..::.::|.::|.|||::..:.|||||||:|:.....
  Fly     2 EEDE------RGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN 60

  Fly    86 VDRAQENRPHIIDGKTVEAK----RALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQF 146
            |:...:|.||.:||:|::.|    |.|.:|::...      .|:|:|||..|..|..||.:|.::
  Fly    61 VNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGG------YKVFLGGLPSNVTETDLRTFFNRY 119

  Fly   147 GNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPG 211
            |.|..|.::.|:...|.|||.|:.|::..:|:....::...:....|::||:      :.:...|
  Fly   120 GKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKA------EPRDGSG 178

  Fly   212 GLANAIKPSLNQQQQQQGGG--------------------QQPPNGNMQAPSFRPPV------PP 250
            |        .|......||.                    .|..||.|..|....|:      |.
  Fly   179 G--------QNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPG 235

  Fly   251 QQAMGPYQQQPPPAPMSAPPPNFNYWGPPPPAMPPYYQQPPPQQMNGWGPYPPPQQ----NGWN- 310
            .|..|...||......::.|.::..||.||..     |.||||    |..|..|||    .|:: 
  Fly   236 YQGWGTSPQQQQYGYGNSGPGSYQGWGAPPGP-----QGPPPQ----WSNYAGPQQTQGYGGYDM 291

  Fly   311 ------APPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPMG---------------HNGPPPT 354
                  ..|..|.|...|  |.|..||  ....|.||  |..|               ..||..|
  Fly   292 YNSTSTGAPSGPSGGGSW--NSWNMPP--NSAGPTGA--PGAGAGTATDMYSRAQAWATGGPSTT 350

  Fly   355 APGNWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGYQQNYGGGPSKHNNMNANRMNPYSAGPPN 419
            .|.. .||...||     :....|........:|:||..:|.      |.:.....:.|.|||.:
  Fly   351 GPVG-GMPRTGPG-----NSASKSGSEYDYGGYGSGYDYDYS------NYVKQEGASNYGAGPRS 403

  Fly   420 SY---HTPQPPAYT 430
            :|   .:.|||..|
  Fly   404 AYGNDSSTQPPYAT 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 34/80 (43%)
RRM2_hnRNPA_like 124..196 CDD:240774 22/71 (31%)
Hrb27CNP_001162897.1 RRM1_DAZAP1 8..89 CDD:241018 34/80 (43%)
RRM2_DAZAP1 94..173 CDD:240773 24/90 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463977
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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