DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and hnrnpa0b

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_999871.1 Gene:hnrnpa0b / 334222 ZFINID:ZDB-GENE-030131-6154 Length:314 Species:Danio rerio


Alignment Length:430 Identity:124/430 - (28%)
Similarity:176/430 - (40%) Gaps:123/430 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
            |:|.|.|||:|||...||.:.|:.::.|:|.:.|.||:::...:|||.|||:||:.|...|.|..
Zfish     3 EMEKLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMA 67

  Fly    92 NRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLT 156
            .|||::|||.||.|||:.|.:....|....|||:|||||||:.:|:.|.|:|.|||.:...:::|
Zfish    68 ARPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVIT 132

  Fly   157 DKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSL 221
            ||.|||:|||.||.|:|.|:.|||::.|.|.|....|:|||:   |.|:|.|..||....     
Zfish   133 DKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKA---LTKQEIQAAGGARGG----- 189

  Fly   222 NQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYWGPPPPAMPPY 286
                :.:|||                    :.||               .|.|.:|         
Zfish   190 ----RGRGGG--------------------RGMG---------------RNQNGFG--------- 206

  Fly   287 YQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPMGHNGP 351
                 ..:..|:|.|......|:.                                    |::|.
Zfish   207 -----GGRGGGYGGYGGGYGGGYG------------------------------------GNDGG 230

  Fly   352 PPTAPGNWNMPPPVPGAAPPSHQQQSSQQ--PTPQPNFGTGY-QQNYGGGPSKHNNMNANRMNPY 413
            ...:.|:........|.....:.:|....  .....:||:|| ||:.|.||.|..|         
Zfish   231 YGGSYGSGGYGGGYGGGYGGGYGEQMGGYGGGNDYSDFGSGYGQQSSGYGPMKGGN--------- 286

  Fly   414 SAGPPNSYHTPQPPAYTGYNAGPLPPNGSVPPPTGAKAVG 453
                          .|.|.:..|.|..|...|..|....|
Zfish   287 --------------TYGGRSGAPYPRGGGGGPGYGRGGYG 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 36/71 (51%)
RRM_SF 33..110 CDD:473069 36/76 (47%)
hnrnpa0bNP_999871.1 RRM_SF 6..84 CDD:473069 36/77 (47%)
RRM_SF 100..179 CDD:473069 41/81 (51%)
HnRNPA1 263..294 CDD:463312 13/53 (25%)

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