DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and rbm38

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001103597.1 Gene:rbm38 / 333991 ZFINID:ZDB-GENE-030131-5923 Length:234 Species:Danio rerio


Alignment Length:236 Identity:65/236 - (27%)
Similarity:96/236 - (40%) Gaps:43/236 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 SRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDK 179
            |.:.:.:..|:|||||..:..:..||:||..||::....::||:.|||.||:.||...|..|.::
Zfish    17 SIQKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAER 81

  Fly   180 AILKKQHAIKYVHVDVKKSIYN---LDKKEKQQPGGLANAIK---PSLNQQQQQQGGGQQP---P 235
            | .|..:.|    :|.:|:..|   |..|.:....|.:..::   |:|.|:|.   |..||   |
Zfish    82 A-CKDPNPI----IDGRKANVNLAYLGAKPRSPLTGYSTGVQQVHPTLIQRQY---GLSQPYVYP 138

  Fly   236 NGNMQAPSFRPPVPPQQAMGP-------YQQQPPPA----PMSAPPPNFNYWGPPPPAMPPYYQQ 289
            ...:|.....|......:..|       |.|....|    |.:|.|...:|..||..|.|.....
Zfish   139 QAVLQPSLLLPTQVSSTSSSPYLDFSTAYAQYAASAFEQYPYAASPGFLSYMYPPGTAGPSSAIS 203

  Fly   290 PPPQQMNGWGPYPPPQQNGWNAPPPP----PPGAQQWHANQ 326
            .         |.|.|...|..||...    ||  .|.|.::
Zfish   204 T---------PIPNPLPTGGGAPSTAFIQIPP--HQLHTDR 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 27/71 (38%)
RRM_SF 33..110 CDD:473069
rbm38NP_001103597.1 RRM_RBM24_RBM38_like 25..100 CDD:409818 29/79 (37%)
PABP-1234 <37..215 CDD:130689 52/194 (27%)
Blue background indicates that the domain is not in the aligned region.

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