DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rb97D and hnrnpa0a

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_997810.2 Gene:hnrnpa0a / 323529 ZFINID:ZDB-GENE-030131-2249 Length:305 Species:Danio rerio


Alignment Length:399 Identity:126/399 - (31%)
Similarity:174/399 - (43%) Gaps:118/399 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 EDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMV 86
            |:.:|      |||:|||...||::.|:..:.|:||:.|.||:::...||||.|||:||:.....
Zfish     6 ENQLC------KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEA 64

  Fly    87 DRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVS 151
            |.|...||||:||..||.|||:.|.:....|....|||:|:|||||:.:|:.||:.|.|||.|..
Zfish    65 DSAMSARPHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEK 129

  Fly   152 VKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANA 216
            .:::|||.|||:|||.||.|:|.|:.|||::.|.|.|....|:|||:   |.|:|.|..|     
Zfish   130 AEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHIINGHKVEVKKA---LTKQEMQAAG----- 186

  Fly   217 IKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYWGPPPP 281
                      .:|||:....|.             :.||              .|...|.|    
Zfish   187 ----------SRGGGRGGRGGG-------------RGMG--------------RPQNGYGG---- 210

  Fly   282 AMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPM 346
                        :..|:|.|   ...|:........|....:...:|           |.....|
Zfish   211 ------------RGGGYGNY---GGGGYGGNDGYGGGYGGGYGGGYG-----------GGYGDQM 249

  Fly   347 -GHNGPPPTAPGN-WNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGY-QQNYGGGPSKHNNMNAN 408
             |:.|      || :|                         :||:|| ||:.|.||.|.|  .:.
Zfish   250 EGYGG------GNGYN-------------------------DFGSGYGQQSSGYGPMKGN--YSG 281

  Fly   409 RMN-PYSAG 416
            |.| |||.|
Zfish   282 RSNAPYSRG 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 36/71 (51%)
RRM_SF 33..110 CDD:473069 37/76 (49%)
hnrnpa0aNP_997810.2 RRM1_hnRNPA0 8..86 CDD:409764 37/83 (45%)
RRM_SF 102..181 CDD:473069 41/81 (51%)
HnRNPA1 260..286 CDD:463312 13/27 (48%)

Return to query results.
Submit another query.