DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and ssx

DIOPT Version :9

Sequence 1:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster


Alignment Length:465 Identity:117/465 - (25%)
Similarity:160/465 - (34%) Gaps:130/465 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITY-TKSLMVDRAQENRPHII 97
            |.|..|....|:..|...:...|.:....:|||..|..|.|:||:.| |:|...|..|:     :
  Fly    95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQK-----L 154

  Fly    98 DGKTVEAKR---ALPRPERES-RETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDK 158
            :|..|..||   :..||..:| ::||     |:|..|..|.:::.|...|..:|.:|...:|.||
  Fly   155 NGFYVRNKRLKVSYARPGG
QSIKDTN-----LYVINLSRNINDDMLDRIFSPYGLIVQRNILRDK 214

  Fly   159 TTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQP--------GGLAN 215
            .||:.||.|||.::..:...:||               |::.|...:...||        .|.|.
  Fly   215 LTGRPRGVAFVRYNKREEAQEAI---------------KALNNTVPEGGSQPIWVRLAEEHGKAK 264

  Fly   216 AIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYWGPPP 280
            |.     |...|.|||.....|.          ||.  |||.....||...:    |.::.....
  Fly   265 AA-----QFMAQIGGGNGGGGGG----------PPH--MGPGGPMHPPHHHN----NHHHNNHHN 308

  Fly   281 PAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPP 345
            |.|||::.||.       .|:..||.:      |.....|..|                     |
  Fly   309 PHMPPHHHQPQ-------HPHQHPQHH------PQLHHMQHHH---------------------P 339

  Fly   346 MGHNGPPP-------TAPGNWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGYQQNYGGGPSK-- 401
            ..||...|       ....:.||     |...|.|.||  ..|... |.|.|.....|.|...  
  Fly   340 NNHNNNHPNNHHHNNNNNNHHNM-----GGPHPHHMQQ--MHPMGM-NMGMGVNMGMGMGMGMPI 396

  Fly   402 HNNMNANRMNPYSAGPPNSYHTPQPPAYTG-YNAGPLP-----PNGSVPPPTGAKAVGVSNGSVA 460
            |.............|..|.:|.    |:.| ....|||     |  |.|.|.|       || :.
  Fly   397 HGGGGGGGGGGGGGGGGNFHHM----AHRGEVFMLPLPICSRFP--SQPHPVG-------NG-IC 447

  Fly   461 TGGSANSKYR 470
            ...:.||::|
  Fly   448 HSPNKNSRFR 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 23/79 (29%)
RRM2_hnRNPA_like 124..196 CDD:240774 20/71 (28%)
ssxNP_569908.1 RRM_SF 93..173 CDD:302621 25/82 (30%)
RRM_SF 179..257 CDD:302621 26/97 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.010

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