DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and CSTF2T

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_056050.1 Gene:CSTF2T / 23283 HGNCID:17086 Length:616 Species:Homo sapiens


Alignment Length:519 Identity:116/519 - (22%)
Similarity:161/519 - (31%) Gaps:197/519 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK-- 183
            |::.:|||.:.....||.|::.|.:.|:|||.:|:.|:.|||.:|:.|.|:.|.:....|:..  
Human    14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 78

  Fly   184 -KQHAIKYVHVDVKKSIYNLDKKEKQQPGGLA--------NAIKP------------SLNQQQQ- 226
             ::.:.:.:.||...|..|  |:|.:..|..|        :.|.|            ||..:|. 
Human    79 GREFSGRALRVDNAASEKN--KEELKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMF 141

  Fly   227 ---------QQGGGQQPPNGNMQAPSF-----------------------------RPPVP-PQQ 252
                     .|...|:..|..:|.|..                             .|.:| ..|
Human   142 ELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTPLIPGKSQ 206

  Fly   253 AMGPYQQQPPPAPMSAPPPN--FNYWGPPPPAMPPYYQQPPPQQMNGWGPYPP----PQQNGWNA 311
            ::......|.|.|...|.||  .|...||.| .|.:..:.|.:.:      ||    |.|.|..|
Human   207 SVSVSGPGPGPGPGLCPGPNVLLNQQNPPAP-QPQHLARRPVKDI------PPLMQTPIQGGIPA 264

  Fly   312 PPPPP---PGAQQWHANQWGCPPPVQQVPPVGAVP-------------------------PPMGH 348
            |.|.|   |||........|...|...:|.||.||                         ||.|.
Human   265 PGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGL 329

  Fly   349 NGPPPTAP------------------GNWNMPPPVPGAA------PPSHQQQSSQQPTPQPNFG- 388
            .|..|..|                  |..:..||:..|:      |.||:.:......|:...| 
Human   330 LGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGE 394

  Fly   389 --------TGYQQNYGGGPSKH-----------------------------NNMNANRMN----- 411
                    .|...:..||....                             ..|.|..|:     
Human   395 PRGPMIDQRGLPMDGRGGRDSRAMETRAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLE 459

  Fly   412 -----PYSAGPPNSYHTPQPPAYTGYNAGPLPPN-GSVPPPTGAKAV----GVSN---GSVATG 462
                 |.|.||           .||...||.|.| |:..||.|.:.|    ||.|   |...||
Human   460 MRGPVPSSRGP-----------MTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTG 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 23/74 (31%)
RRM_SF 33..110 CDD:473069
CSTF2TNP_056050.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 24/79 (30%)
CSTF2_hinge 112..191 CDD:433869 10/78 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..241 12/38 (32%)
PRK12323 <242..>387 CDD:481241 33/150 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..418 32/155 (21%)
9 X 5 AA tandem repeats of M-E-T-R-[AG] 418..462 3/43 (7%)
9 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q 505..549 3/8 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..573
CSTF_C 572..612 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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