DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and Hnrnpa3

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_666242.2 Gene:Hnrnpa3 / 229279 MGIID:1917171 Length:379 Species:Mus musculus


Alignment Length:463 Identity:139/463 - (30%)
Similarity:197/463 - (42%) Gaps:120/463 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLM 85
            |..|..|.|.|||||||||:..||:::|:..:.:||.:.|.|||||..|||||||||:||:....
Mouse    24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88

  Fly    86 VDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150
            ||.|...|||.:||:.||.|||:.|.:......:::|||:||||:|::.:|..||:||.::|.:.
Mouse    89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIE 153

  Fly   151 SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLAN 215
            :::::.|:.:||:||||||.|||:|.|||.:::|.|.|...:.:|||:   |.|:|.|..|    
Mouse   154 TIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA---LSKQEMQSAG---- 211

  Fly   216 AIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYWGPPP 280
                    .|:.:|||    :||.....                    ........||...|   
Mouse   212 --------SQRGRGGG----SGNFMGRG--------------------GNFGGGGGNFGRGG--- 241

  Fly   281 PAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPP 345
                         ...|.|.|     .|.........|......|.:|..               
Mouse   242 -------------NFGGRGGY-----GGGGGGSRGSYGGGDGGYNGFGGD--------------- 273

  Fly   346 MGHN---GPPPTAPGNWNMPPPVPGAAPPSHQQQSS---------QQPTPQPNFGTGYQQNYGGG 398
             |.|   ||..::.|.:       |...|.:..|..         .......|||.|   |||||
Mouse   274 -GGNYGGGPGYSSRGGY-------GGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGG---NYGGG 327

  Fly   399 PSKHNNMNANRMNPYSAGPPNSYHTPQPPAYTGYNAGPLPPNGSVPPPTGAKAVGVSNGSVATGG 463
            .      |.|....||....::|...:..::.|.::|         .|.|.   |..:|    ||
Mouse   328 G------NYNDFGNYSGQQQSNYGPMKGGSFGGRSSG---------SPYGG---GYGSG----GG 370

  Fly   464 SANSKYRR 471
            |.....||
Mouse   371 SGGYGSRR 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 31/71 (44%)
RRM_SF 33..110 CDD:473069 42/76 (55%)
Hnrnpa3NP_666242.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34 4/9 (44%)
RRM1_hnRNPA_like 36..113 CDD:409992 42/76 (55%)
RRM2_hnRNPA3 126..205 CDD:409996 36/81 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..225 10/36 (28%)
HnRNPA1 332..>348 CDD:463312 3/15 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 335..379 14/60 (23%)

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