DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and sgnh-1

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_500666.2 Gene:sgnh-1 / 177260 WormBaseID:WBGene00020354 Length:177 Species:Caenorhabditis elegans


Alignment Length:216 Identity:43/216 - (19%)
Similarity:65/216 - (30%) Gaps:94/216 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 GANEAGTQSNTISLDSDDES----------GDGAVELEPSFSAAN-------------------- 119
            |.|:|..:.|||....|.|.          ..|...:..|:|:.|                    
 Worm   218 GTNKAINEGNTILRYEDLERKHIAPYKKCISQGVSTVMASYSSWNGDKLHSHYFLLTEILKQKLG 282

  Fly   120 ------SSFE---------TENYEMRIKIKWGRGIE-TFVHRRYQKFEDIFNQLAAKESADRACI 168
                  |.:|         ..||...:||....||: ..|..:|::|.:....|.  ||.:.:..
 Worm   283 FKGYVVSDWEGLDRLSDPPGSNYRNCVKIGINAGIDMVMVPFKYEQFRNDLIDLV--ESGEVSMA 345

  Fly   169 FLN-LDDRIVYASDTPDSIDYKPHQFIAG--RILKTKAPILPTAHGSSTGHNSNMITLKVQMEKR 230
            .:| ..:||:..            :|:||  ....|...:|||            :..||     
 Worm   346 RVNDAVERILRV------------KFVAGLFEFPLTDRSLLPT------------VGCKV----- 381

  Fly   231 KQPLRLQIDKNQTMSVLVIKC 251
                          |.||:||
 Worm   382 --------------SSLVLKC 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 16/73 (22%)
RRM_SF 33..110 CDD:473069 9/34 (26%)
sgnh-1NP_500666.2 RRM_II_PABPs 47..119 CDD:409747
Blue background indicates that the domain is not in the aligned region.

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