Protein Alignment Rb97D and pabp-2

DIOPT Version :10

• Sequence 1: NP_524520.1
• Gene: Rb97D / 43231
• FlyBaseID: FBgn0004903
• Length: 471
• Species: Drosophila melanogaster
• Sequence 2: NP_492504.1
• Gene: pabp-2 / 172768
• WormBaseID: WBGene00003904
• Length: 205
• Species: Caenorhabditis elegans
• Alignment Length: 153
• Identity: 34/153 - (22%)
• Similarity: 64/153 - (41%)
• Gaps: 20/153 - (13%)

  Fly   104 AKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAF 168
            :.::|..||.::   ....|.::||.:......|.:.::|...|:|..|.:..|:.:|..:|||:
 Worm    62 SSQSLLTPEEKA---EADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAY 123

  Fly   169 VEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSLNQQQQQQG---- 229
            |||.:.:.:..|:......::...:.|       |.|...:||.......|...:..:.:|
 Worm   124 VEFTEKEGMQNALAMTDSLLRGRQIKV-------DPKRTNKPGMSTTNRPPFRGRGGRGRGNVIV 181

  Fly   230 -----GGQQP-PNGNMQAPSFRP 246
                 ||.:| ..|..:.|.|.|
 Worm   182 KYVYAGGFRPRGRGARRRPGFAP 204

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rb97D	NP_524520.1	RRM2_hnRNPA_like	124..196	CDD:409766	16/71 (23%)
		RRM_SF	33..110	CDD:473069	1/5 (20%)
pabp-2	NP_492504.1	RRM_SF	79..154	CDD:473069	18/81 (22%)