DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and CSTF2

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:463 Identity:109/463 - (23%)
Similarity:158/463 - (34%) Gaps:152/463 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK-- 183
            |::.:|||.:.....||.|::.|.:.|.|||.:|:.|:.|||.:|:.|.|:.|.:....|:..  
Human    14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 78

  Fly   184 -KQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSLNQQQQQQGGGQQPPNGNMQAPSFRP- 246
             ::.:.:.:.||...|..|  |:|.:..|..|..|               :.|.|...:|...| 
Human    79 GREFSGRALRVDNAASEKN--KEELKSLGTGAPVI---------------ESPYGETISPEDAPE 126

  Fly   247 -------PVPPQQAMGPYQQQPPPAPMSAPPP--NFNYWGP-----------------PPPAMPP 285
                   .:||:| |....:|......::|..  |.....|                 |..|:..
Human   127 SISKAVASLPPEQ-MFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKI 190

  Fly   286 YYQQP--------PPQQMNGWGP-----YPPPQQNGWNAPPPPPPGAQQ---WHANQWGCPPPVQ 334
            .::|.        .||.::|.||     ....|||      |..|.||.   .|.|  |.||.:|
Human   191 LHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQN------PQAPQAQSLGGMHVN--GAPPLMQ 247

  Fly   335 Q-----VPPVGAVPPPMGHNGPPPTAPGNW-----NMP----------------PPVPGAAP--- 370
            .     ||..|.:|..:...||...|||..     .||                .||..|.|   
Human   248 ASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQGTLQHSPVGPAGPASI 312

  Fly   371 -----PSHQQQSSQQ--------PTPQPNFGTGYQQNYGG------GPSKHNNMNANRMNPYSAG 416
                 |....:::.|        |||:...|.......||      |..:....    :.|...|
Human   313 ERVQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGY----LGPPHQG 373

  Fly   417 PPNSYHTP-----QPPAYTGYNAGPLP--------PNGSV-----PP--------PTGAKAVGVS 455
            || .:|.|     .||.:. ...||||        |.|.:     ||        |.|..|.|:.
Human   374 PP-MHHVPGHESRGPPPHE-LRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGME 436

  Fly   456 NGSVATGG 463
            ..::...|
Human   437 ARAMEARG 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 23/74 (31%)
RRM_SF 33..110 CDD:473069
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 85/363 (23%)
RRM_CSTF2_CSTF2T 10..94 CDD:410072 24/79 (30%)
CSTF2_hinge 112..191 CDD:433869 14/79 (18%)
PHA03378 <253..455 CDD:223065 45/198 (23%)
CSTF_C 553..593 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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