DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rb97D and LOC1274558

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:XP_313699.4 Gene:LOC1274558 / 1274558 VectorBaseID:AGAMI1_004491 Length:390 Species:Anopheles gambiae


Alignment Length:423 Identity:97/423 - (22%)
Similarity:130/423 - (30%) Gaps:191/423 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDA--------- 176
            |::.:|||.:..:..||.|:|.|.:.|.|:|:||:.|:.|||.:|:.|.|:.|.:.         
Mosquito    14 SMRSVFVGNIPYDATEEALKEIFCEVGLVLSMKLVYDRETGKPKGYGFCEYKDKETALSAMRNLN 78

  Fly   177 ----------VDKAILKK------------------------QHA----IKYVHVDVKKSIYNLD 203
                      ||.|..:|                        |||    .|:|.....:.::.|.
Mosquito    79 GYVFGGRPLRVDNACTEKSRMEMAALLHVNRAESPYGEHCSPQHAPEVITKHVSSLPPERLHELM 143

  Fly   204 KKEKQ------------------------QPGGLANAIKPSLN-----------------QQQQQ 227
            .:.||                        |...|..||.|:..                 |..|.
Mosquito   144 LQMKQLVQTNPFEARHMLVQNPQLAYALLQVQVLTKAIDPAAAYSFLYKSQSAPGFSEPFQGNQP 208

  Fly   228 QGG-----GQQPP-----NGNMQAPSFRPPVPP---QQAMGPYQQQPPPAPMSAPPPNFNYWGPP 279
            |||     ||..|     |||  |.||||.|.|   :||........|....:|           
Mosquito   209 QGGMQGNAGQFMPQYGANNGN--AESFRPNVDPRLGRQAASGANDYDPRNRFAA----------- 260

  Fly   280 PPAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPP 344
                         ....|..|..|||||.  ||.|..|                :|.|    |.|
Mosquito   261 -------------SNQTGQRPAQPPQQNA--APFPTDP----------------RQRP----VDP 290

  Fly   345 PMGHNGPPPTAPGNWNMPPPVPGAAPPSHQQQSSQQPTPQPNFGTGYQQNYGGGPSKHNNMNANR 409
            .||.:      |...|     .|||                :||:...|...||..:       .
Mosquito   291 RMGKD------PRLMN-----AGAA----------------HFGSNANQLPSGGTGR-------P 321

  Fly   410 MNPYSAGPPNSYHTPQPPAYTGYNAGPLPPNGS 442
            |.|.:|.        ...|.:|.|..|||.:.:
Mosquito   322 MVPSAAS--------LSAASSGLNLDPLPSDAT 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 30/118 (25%)
RRM_SF 33..110 CDD:473069
LOC1274558XP_313699.4 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.