DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and LOC100911361

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001417282.1 Gene:LOC100911361 / 100911361 RGDID:6493616 Length:357 Species:Rattus norvegicus


Alignment Length:463 Identity:139/463 - (30%)
Similarity:197/463 - (42%) Gaps:120/463 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLM 85
            |..|..|.|.|||||||||:..||:::|:..:.:||.:.|.|||||..|||||||||:||:....
  Rat     2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 66

  Fly    86 VDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150
            ||.|...|||.:||:.||.|||:.|.:......:::|||:||||:|::.:|..||:||.::|.:.
  Rat    67 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIE 131

  Fly   151 SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLAN 215
            :::::.|:.:||:||||||.|||:|.|||.:::|.|.|...:.:|||:   |.|:|.|..|    
  Rat   132 TIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA---LSKQEMQSAG---- 189

  Fly   216 AIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYWGPPP 280
                    .|:.:|||    :||.....                    ........||...|   
  Rat   190 --------SQRGRGGG----SGNFMGRG--------------------GNFGGGGGNFGRGG--- 219

  Fly   281 PAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPP 345
                         ...|.|.|     .|.........|......|.:|..               
  Rat   220 -------------NFGGRGGY-----GGGGGGSRGSYGGGDGGYNGFGGD--------------- 251

  Fly   346 MGHN---GPPPTAPGNWNMPPPVPGAAPPSHQQQSS---------QQPTPQPNFGTGYQQNYGGG 398
             |.|   ||..::.|.:       |...|.:..|..         .......|||.|   |||||
  Rat   252 -GGNYGGGPGYSSRGGY-------GGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGG---NYGGG 305

  Fly   399 PSKHNNMNANRMNPYSAGPPNSYHTPQPPAYTGYNAGPLPPNGSVPPPTGAKAVGVSNGSVATGG 463
            .      |.|....||....::|...:..::.|.::|         .|.|.   |..:|    ||
  Rat   306 G------NYNDFGNYSGQQQSNYGPMKGGSFGGRSSG---------SPYGG---GYGSG----GG 348

  Fly   464 SANSKYRR 471
            |.....||
  Rat   349 SGGYGSRR 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 31/71 (44%)
RRM_SF 33..110 CDD:473069 42/76 (55%)
LOC100911361NP_001417282.1 None

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