DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and eif4h

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001096677.1 Gene:eif4h / 100125209 XenbaseID:XB-GENE-970966 Length:252 Species:Xenopus tropicalis


Alignment Length:185 Identity:43/185 - (23%)
Similarity:65/185 - (35%) Gaps:60/185 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 NVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAI---KYVHVDVKKSIYNLDKKEKQQ 209
            ::.||:|:.||.|.|.:||.:|||||.|::.:| |....||   :.:.||:.:.       .||.
 Frog    66 SIRSVRLVRDKETDKFKGFCYVEFDDLDSLKEA-LTYDGAIFIDRAIRVDIAEG-------RKQD 122

  Fly   210 PGGLA------------------NAIKPSLNQQQQQQG-------GGQQPPNGNMQAP------- 242
            .||..                  ...:...|...:...       ||:..|.|:.:.|       
 Frog   123 KGGFGFKKGGPDERGHDSSYGSRGGARDDFNSGYKDDDFLGGRGRGGRSGPPGDRRGPPPAGGGP 187

  Fly   243 ------------SFRPPVPPQQAMGPYQQQPP-----PAPMSAPPPNFNYWGPPP 280
                        .||.|...::|..|..|..|     |....|.|.:..:.|..|
 Frog   188 GRYRDAPRGGSADFREPTDEERAQRPRLQLKPRTVATPLNQVANPHSAIFGGAKP 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 21/50 (42%)
RRM_SF 33..110 CDD:473069
eif4hNP_001096677.1 RRM_eIF4H 37..120 CDD:409835 21/61 (34%)
Blue background indicates that the domain is not in the aligned region.

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