DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and msi2

DIOPT Version :9

Sequence 1:NP_001014671.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:XP_004911774.1 Gene:msi2 / 100038158 XenbaseID:XB-GENE-488852 Length:407 Species:Xenopus tropicalis


Alignment Length:417 Identity:117/417 - (28%)
Similarity:169/417 - (40%) Gaps:95/417 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHII 97
            |:|||||:..|:.::|:.::.::|::.:.:||||..|||||||||:|:.....||:......|.:
 Frog    22 KMFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHEL 86

  Fly    98 DGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGK 162
            |.||::.|.|.||..:....|.  .||:|||||..|...|.:::||.|||.|....|:.||||.:
 Frog    87 DSKTIDPKVAFPRRAQPKMVTR--TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149

  Fly   163 RRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPG--GLANAIKPSLNQQQ 225
            .|||.||.|:..|.|:|......|.|....|:.||:   ..|:....||  |.|..:..:::...
 Frog   150 HRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKA---QPKEVMFPPGTRGRARGLPYTMDAFM 211

  Fly   226 QQQG-----------GGQQP---PNGNMQAPSFRPPVPPQQAMGPYQQQPPPAPMSAPPPNFNYW 276
            ...|           |...|   |:.:.|.|.|    |...|.||.......|...:..|::.::
 Frog   212 LGMGMLGYPNFVATYGRGYPGFAPSYSYQFPGF----PAAAAYGPVAAAAVAAARGSGIPDYGFY 272

  Fly   277 ------------------GPPPPAM-----------PPYYQQPPPQQMNGWGPYPPPQQNGWNAP 312
                              ||....|           .|.:..|.|.|...     |...|.::|.
 Frog   273 TTPGDQRATLSFADYGSMGPRTAQMLRSEHAASASNSPLHHLPSPDQFKS-----PAVLNSYSAQ 332

  Fly   313 PPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPMGHNGPPPTAPGNW---NMPPPVPG----AAP 370
            |            .:|.|     ..|.||          .|..||.:   |.|.||..    |:.
 Frog   333 P------------NYGAP-----ASPAGA----------NPARPGGFPGANSPGPVADLYGTASQ 370

  Fly   371 PSHQQQSSQQPTPQPNFGTGYQQNYGG 397
            .|.........:|||  |:|:.....|
 Frog   371 DSGVGNYISAASPQP--GSGFSHGIAG 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_001014671.1 RRM1_hnRNPA_like 33..110 CDD:241022 31/76 (41%)
RRM2_hnRNPA_like 124..196 CDD:240774 31/71 (44%)
msi2XP_004911774.1 RRM <2..162 CDD:223796 60/141 (43%)
RRM1_MSI 23..97 CDD:241020 29/73 (40%)
RRM2_MSI 111..184 CDD:240769 31/72 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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