DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rb97D and msi2a

DIOPT Version :10

Sequence 1:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster
Sequence 2:XP_073769523.1 Gene:msi2a / 100002680 ZFINID:ZDB-GENE-030826-25 Length:431 Species:Danio rerio


Alignment Length:434 Identity:117/434 - (26%)
Similarity:172/434 - (39%) Gaps:105/434 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHII 97
            |:|||||:..|:.::|:.::.::|::.:.:||||..|||||||||||:.....||:......|.:
Zfish    22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQPHHEL 86

  Fly    98 DGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGK 162
            |.||::.|.|.||..:....|.  .||:|||||..:...|.:::||.|||.|....|:.||||.:
Zfish    87 DSKTIDPKVAFPRRAQPKMVTR--TKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNR 149

  Fly   163 RR------------------------GFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLD 203
            .|                        ||.||.|::.|.|:|......|.|....|:.||:   ..
Zfish   150 HRDLRRREELTMTTGFKSNEEVLQKAGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKA---QP 211

  Fly   204 KKEKQQPG--GLANAIKPSLNQQQQQQGGGQQP--------------PNGNMQAPSFRPPVPPQQ 252
            |:....||  |.|.::..:::......|....|              |:.:.|.|.|     |..
Zfish   212 KEVMFPPGTRGRARSLPYTMDAFMLGMGMLSYPNIVATYGRGYTGFSPSYSYQFPGF-----PAT 271

  Fly   253 AMGPYQQQPPPA-----------------PMSAPP--PNFNYWGPPPPAMPPYYQQPPPQQMNGW 298
            |.||.......|                 |.:|.|  |::.::..|..      |:..|.....:
Zfish   272 AYGPVAAAAVAAARGSGRATRGRSGYMAYPQNAGPGFPDYGFYSGPGD------QRAAPCSFADY 330

  Fly   299 ---GPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVPPPMGHNGPPPTAPGNW- 359
               ||:....             .|..|... .|..|.|..|.    |.....:|..|..||.: 
Zfish   331 ATLGPHTGQM-------------LQSEHVTS-TCNSPSQHHPS----PDHFKSSGANPPRPGGFP 377

  Fly   360 --NMPPPVPGAAPPSHQQQS----SQQPTPQPNFGTGYQQNYGG 397
              |.|.||.....||.|..:    ....:|||  |:|:..:..|
Zfish   378 GANSPGPVADLYGPSSQDSAVGNYISAASPQP--GSGFNHSIAG 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 30/95 (32%)
RRM_SF 33..110 CDD:473069 32/76 (42%)
msi2aXP_073769523.1 None

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