DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SPARC and fstl4

DIOPT Version :9

Sequence 1:NP_001262998.1 Gene:SPARC / 43230 FlyBaseID:FBgn0026562 Length:304 Species:Drosophila melanogaster
Sequence 2:XP_021324571.1 Gene:fstl4 / 571664 ZFINID:ZDB-GENE-070127-3 Length:825 Species:Danio rerio


Alignment Length:297 Identity:68/297 - (22%)
Similarity:90/297 - (30%) Gaps:105/297 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LW---LLLGLGLLAVSHVQASTEFSEDLLDEDLDLSDIDENEEEFLRLLEEKNKIKDIERENEIA 65
            ||   :|||..|..|:...|.|...|  |.|  .|.|....|.|        ||:|.        
Zfish     6 LWVLSVLLGASLWLVNGAAAGTTAKE--LQE--GLQDTKHGEPE--------NKVKQ-------- 50

  Fly    66 TKLAEVQHNLLNPVVEVDLCETMSCGAGRICQMH--DEKPKCVCIPECPEEVDTRRLVCTNTNET 128
                       |..|    |:..|||.||.|.:.  ..:.:|||...|.   .|...||.:....
Zfish    51 -----------NAAV----CQRSSCGRGRECVVRAATGRAECVCQERCH---STFVPVCGSDGRF 97

  Fly   129 WPSDCSVYQQRC------------WCDSGEPGCTNPDNAHMHIDYYGACHEPRSCEGEDLKDFPR 181
            :.:.|.:|:..|            .|......||                               
Zfish    98 YQNHCELYRSACVRRRTISALHSKHCFLRGDACT------------------------------- 131

  Fly   182 RMRDWLFNVMRDLAERDELTEHYMQMELEAETN--NSRRWSNAAVWK-WCDLDGDTDRSVSRHEL 243
                        :||.::|....|.|:.::.||  ||.......|.. :...|.:.|..||..||
Zfish   132 ------------MAEYNKLKSILMDMQPQSSTNAENSMAQRRTLVLNMFTYFDRNQDGRVSSEEL 184

  Fly   244 FPI----RAPLVSLEHCIAPFLESCDSNKDHRITLVE 276
            ..|    ....|.||..:...|...|.|.|..:||.|
Zfish   185 AEISVKEHLENVLLECSMQDLLRYDDYNNDGHLTLQE 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SPARCNP_001262998.1 FSL_SPARC 85..168 CDD:238649 20/96 (21%)
SPARC_Ca_bdg 169..278 CDD:287550 27/115 (23%)
SPARC_EC 170..292 CDD:238155 27/114 (24%)
fstl4XP_021324571.1 KAZAL 78..123 CDD:197624 9/47 (19%)
EF-hand_7 167..227 CDD:316058 17/55 (31%)
Ig 250..308 CDD:319273
Ig2_Follistatin_like 342..417 CDD:143213
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.