DRSC/TRiP Functional Genomics Resources

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Protein Alignment SPARC and Spock3

DIOPT Version :9

Sequence 1:NP_001262998.1 Gene:SPARC / 43230 FlyBaseID:FBgn0026562 Length:304 Species:Drosophila melanogaster
Sequence 2:XP_017455591.1 Gene:Spock3 / 306404 RGDID:1305672 Length:451 Species:Rattus norvegicus


Alignment Length:345 Identity:74/345 - (21%)
Similarity:124/345 - (35%) Gaps:69/345 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WLLLGLGLLAVSHVQASTEFSEDLLDEDLDLSDIDENEEEFLRLLEEKNKIKDIERENEIATKLA 69
            |....|...|...|........:.|||...|:.:.:.::|    :.:.||.:|...::...|   
  Rat    31 WCSQTLAAAAAVAVAGGRSDGGNFLDEKQWLTTVSQYDKE----VGQWNKFRDEVEDDYFRT--- 88

  Fly    70 EVQHNLLNPVVEV-----DLCETMSCGAGRICQMHDEK--------------------------- 102
               .|...|:.:.     |.|....|...::|...|.:                           
  Rat    89 ---WNPGKPIDQALDPARDPCLKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGL 150

  Fly   103 PKCVCIPECPEEVDTRRLVCTNTNETWPSDCSVYQQRC--------WCDSGEPGCTNPDNAHMHI 159
            |...| .:||  :.....||.:...::.|.|.:..|.|        .|   |..|..|.:..|..
  Rat   151 PSSTC-KQCP--IAYASPVCGSDGHSYSSQCKLEYQACVLGKQISIKC---EGRCPCPSDKSMST 209

  Fly   160 DYYGACHEPRSCEGEDLKDFPRRMRDWLFNVMRDLAERDELTEHYMQMELEA-ETNNSRRWSNAA 223
                ..:..|:|...:.::...|:||| |..:.:...:::.|:..::.|... :|:......::.
  Rat   210 ----GRNVKRACSDLEFREVANRLRDW-FKALHESGSQNKRTKALLRPERSRFDTSILPICKDSL 269

  Fly   224 VWKWCDLDGDTDRSVSRHELFPIRAPLVSLEHCIAPFLESCDSNKDHRITLVEWGACL--ELDPE 286
            .|.:..||.:.|..:.:.||..|.  |...|||...|..|||:.||..|:..||..|.  :.||.
  Rat   270 GWMFNRLDTNYDLLLDQSELGSIY--LDKNEHCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPP 332

  Fly   287 DLKERCDDVQRAQ--PHLLG 304
            ...| ...:|:.|  ..|||
  Rat   333 CHTE-LSKIQKRQGIKKLLG 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SPARCNP_001262998.1 FSL_SPARC 85..168 CDD:238649 19/117 (16%)
SPARC_Ca_bdg 169..278 CDD:287550 29/109 (27%)
SPARC_EC 170..292 CDD:238155 33/124 (27%)
Spock3XP_017455591.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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